Jatropha Genome Database

JcCB0400811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0400811.10 - phase: 0 
         (231 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013229001 assembled CDS                                       379   e-106
GSVIVT01011242001 assembled CDS                                       375   e-104

>GSVIVT01013229001 assembled CDS
          Length = 560

 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/228 (79%), Positives = 208/228 (91%)

Query: 1   MNDRQKSFILYSSTNFPLPQGVRLSYGTAGFRADASILQSTVFRVGILAALRSLKTQSVI 60
           MN+ Q+S +L +S+ FP PQGV+LSYGTAGFRADASIL+STV+RVGILAALRSLKT+SVI
Sbjct: 1   MNEEQRSLLLKTSSRFPPPQGVKLSYGTAGFRADASILESTVYRVGILAALRSLKTKSVI 60

Query: 61  GLMITASHNKVSDNGVKVADPSGGMLIQDWEPFADAIANAATPINLVQLIDEFVKKENIL 120
           GLMITASHNKVSDNGVK+ADPSGGML Q+WEPFADA+ANA+ P +LV+LI EFVKKENI 
Sbjct: 61  GLMITASHNKVSDNGVKIADPSGGMLTQNWEPFADALANASDPEDLVRLIIEFVKKENIH 120

Query: 121 FDGARSAEVLLGRDTRPSGLFLIEAAKQGVNSIVGALALDMGILTTPQLHWMVRARNKGM 180
           F+GA  AEVLLGRDTRPSG  L+EAAKQG++SIVGA+ALDMG+LTTPQLHWMVRARNKGM
Sbjct: 121 FEGACPAEVLLGRDTRPSGGSLLEAAKQGISSIVGAIALDMGVLTTPQLHWMVRARNKGM 180

Query: 181 KATEDDYYEQLSSSFRCLTDLIPNGHKINEVDDRLVVDGANGVGAEKI 228
           KA+E DY+EQLSSSFRCL DLIP G KINE+ D+L+VDGANGVG EK+
Sbjct: 181 KASEVDYFEQLSSSFRCLMDLIPEGSKINEMGDKLIVDGANGVGGEKL 228


>GSVIVT01011242001 assembled CDS
          Length = 560

 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/228 (78%), Positives = 205/228 (89%)

Query: 1   MNDRQKSFILYSSTNFPLPQGVRLSYGTAGFRADASILQSTVFRVGILAALRSLKTQSVI 60
           MN+ Q+S +L SS+ FP PQGV+LSYGTAGFRADASIL+STV+RVGILAALRSLKT+SVI
Sbjct: 1   MNEEQRSLLLKSSSRFPPPQGVKLSYGTAGFRADASILESTVYRVGILAALRSLKTKSVI 60

Query: 61  GLMITASHNKVSDNGVKVADPSGGMLIQDWEPFADAIANAATPINLVQLIDEFVKKENIL 120
           GLMITASHNKVSDNGVK+ADPSGGML Q+WEPFADA+ANA+ P +LV+LI EFVKKENI 
Sbjct: 61  GLMITASHNKVSDNGVKIADPSGGMLTQNWEPFADALANASDPGDLVRLIIEFVKKENIP 120

Query: 121 FDGARSAEVLLGRDTRPSGLFLIEAAKQGVNSIVGALALDMGILTTPQLHWMVRARNKGM 180
           F+G   AEVLLGRDTR SG  L+EAAKQGV+SIVGA+ALDMG+LTTPQLHWMVRARNK M
Sbjct: 121 FEGVCPAEVLLGRDTRSSGRSLLEAAKQGVSSIVGAIALDMGVLTTPQLHWMVRARNKSM 180

Query: 181 KATEDDYYEQLSSSFRCLTDLIPNGHKINEVDDRLVVDGANGVGAEKI 228
           KA+E DY+EQLSS FRCL DLIP G KINE+DD+L+VDGANGVG EK+
Sbjct: 181 KASEVDYFEQLSSPFRCLMDLIPEGSKINEMDDKLIVDGANGVGGEKL 228