Jatropha Genome Database

JcCB0399861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0399861.10 - phase: 1 /partial
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001142001 assembled CDS                                       154   8e-39

>GSVIVT01001142001 assembled CDS
          Length = 442

 Score =  154 bits (389), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 83/93 (89%), Gaps = 2/93 (2%)

Query: 21  IYCNYDETARKSNQSSSSGIQLYGQIERLLTETVRQSQDAWGGSKDWIEVEGAWVLKPRI 80
           IYCN D++ +K  QS ++GIQ+Y QIERLLTETV+QSQDAWGGS DW EVEGAWVLKP+ 
Sbjct: 56  IYCNSDDSGKK--QSETTGIQVYSQIERLLTETVKQSQDAWGGSSDWSEVEGAWVLKPKN 113

Query: 81  SRPKSVVHFVGGIFVGAAPQLTYRLFLERLVEK 113
           S+P+SVVHFVGGIFVGAAPQLTYRLFLERL E+
Sbjct: 114 SKPRSVVHFVGGIFVGAAPQLTYRLFLERLSER 146