Jatropha Genome Database

JcCB0399111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0399111.10 + phase: 0 
         (91 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011380001 assembled CDS                                       134   7e-33
GSVIVT01020027001 assembled CDS                                       127   9e-31
GSVIVT01008034001 assembled CDS                                       110   2e-25
GSVIVT01008030001 assembled CDS                                        76   3e-15

>GSVIVT01011380001 assembled CDS
          Length = 90

 Score =  134 bits (338), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/75 (89%), Positives = 74/75 (98%)

Query: 17 DEQIIELISKLRQLLPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLTTI 76
          D+QIIEL+SKL+QLLPEIR+RRSDKVSASKVLQETCNYIR+LHREVDDLSERLS+LL T+
Sbjct: 16 DDQIIELVSKLQQLLPEIRNRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSRLLATV 75

Query: 77 DADSPEAAIIRSLIM 91
          DADSPEAAIIRSLIM
Sbjct: 76 DADSPEAAIIRSLIM 90


>GSVIVT01020027001 assembled CDS
          Length = 92

 Score =  127 bits (319), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 73/81 (90%)

Query: 11 SVPRISDEQIIELISKLRQLLPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 70
           V RISD+QI +L+SKL+QL+PEIR+RRSDKVSASKVLQETCNYIRNLHREVDDLS+RLS
Sbjct: 12 GVSRISDDQIADLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLS 71

Query: 71 QLLTTIDADSPEAAIIRSLIM 91
           LL + D DS +AAIIRSL+M
Sbjct: 72 ALLASTDTDSDQAAIIRSLLM 92


>GSVIVT01008034001 assembled CDS
          Length = 91

 Score =  110 bits (274), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 68/76 (89%), Gaps = 2/76 (2%)

Query: 15 ISDEQIIELISKLRQLLPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLT 74
          I+D+QI +L+SKL+QLLPEIR R SDKVSA+KVLQETCNYIR+L+REVDDLSERLS+LL 
Sbjct: 16 ITDDQINDLVSKLQQLLPEIRGRHSDKVSAAKVLQETCNYIRSLNREVDDLSERLSELLA 75

Query: 75 TIDADSPEAAIIRSLI 90
          T   DS +AAIIRSL+
Sbjct: 76 T--TDSAQAAIIRSLL 89


>GSVIVT01008030001 assembled CDS
          Length = 90

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 6/92 (6%)

Query: 1  MSSRRPRQSASVPRISDEQIIELISKLRQLLPEIRDRR-SDKVSASKVLQETCNYIRNLH 59
          MS++R R S    R++D++I +LI KL+ LLP    RR S   SA ++L+ETC+YI+ LH
Sbjct: 1  MSTQRARAS----RVTDDEINDLILKLQALLPHSNQRRTSTGASAWRILKETCSYIKRLH 56

Query: 60 REVDDLSERLSQLLTTIDA-DSPEAAIIRSLI 90
          REV DLSERLSQLL ++D  +  E   +RSL+
Sbjct: 57 REVGDLSERLSQLLDSLDNINGVEVEQLRSLL 88