Jatropha Genome Database

JcCB0398871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398871.10 + phase: 2 /partial
         (53 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009697001 assembled CDS                                        90   2e-19

>GSVIVT01009697001 assembled CDS
          Length = 568

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/44 (90%), Positives = 43/44 (97%)

Query: 10  AVCSAVGVLPLSLQYGFSIVEKFLKGASSIDQHFSSAPFEKNVP 53
           +VCSAVGVLPLSLQYGFS+VEKFLKGASSIDQHF SAPFEKN+P
Sbjct: 276 SVCSAVGVLPLSLQYGFSVVEKFLKGASSIDQHFYSAPFEKNIP 319