Jatropha Genome Database

JcCB0398861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398861.10 + phase: 1 /partial
         (185 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009697001 assembled CDS                                       324   1e-89
GSVIVT01025962001 assembled CDS                                        50   6e-07

>GSVIVT01009697001 assembled CDS
          Length = 568

 Score =  324 bits (831), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 156/185 (84%), Positives = 177/185 (95%)

Query: 1   EPGTNGQHSFYQLIHQGRIIPCDFIGVVKSQQPVYLEGEVVNNHDELMSNFFAQPDALAY 60
           EPGTNGQHSFYQLIHQGR+IPCDFIGVVKSQQPVYL+GEVV+NHDELMSNFFAQPDALAY
Sbjct: 384 EPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAY 443

Query: 61  GKTAEQLQKENVPQNLIPHKTFSGNRPSLSILLSALDAYKIGQLLAIYEHRVVVQGFIWG 120
           GKT EQLQ ENVPQ+LIPHKTFSGNRPSLS+LL +L+AY IGQLLAIYEHR+ V+GF+WG
Sbjct: 444 GKTPEQLQNENVPQHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFVWG 503

Query: 121 INSFDQWGVELGKSLATQVRKQLHASRTKGEPVEGFNFSTTSLLKRYLEESSDVPKNPQT 180
           INSFDQWGVELGKSLA+QVRKQL+++RTKG+PVEGFN+STT+LLKRYLE SSD+P +P T
Sbjct: 504 INSFDQWGVELGKSLASQVRKQLNSARTKGKPVEGFNYSTTTLLKRYLEASSDIPSDPCT 563

Query: 181 LLPRI 185
           LLP++
Sbjct: 564 LLPQM 568


>GSVIVT01025962001 assembled CDS
          Length = 64

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 37/41 (90%)

Query: 58 LAYGKTAEQLQKENVPQNLIPHKTFSGNRPSLSILLSALDA 98
          L++ +T EQLQ ENVPQ+LIPHKTFSGNRPSLS+LL +LDA
Sbjct: 24 LSFLQTPEQLQNENVPQHLIPHKTFSGNRPSLSLLLPSLDA 64