Jatropha Genome Database

JcCB0398651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398651.10 + phase: 0 
         (149 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003483001 assembled CDS                                       152   8e-38
GSVIVT01034993001 assembled CDS                                       107   2e-24
GSVIVT01031688001 assembled CDS                                        59   7e-10

>GSVIVT01003483001 assembled CDS
          Length = 249

 Score =  152 bits (383), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 87/106 (82%), Gaps = 1/106 (0%)

Query: 43  NRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVTGCDISGIHLTCGWFSSARLI 102
           NRI G  C+K +IVI QGPT PLPSGIPTYTV+I+NVCV GC IS IH+ CGWFSSARLI
Sbjct: 144 NRI-GGTCSKDNIVIFQGPTTPLPSGIPTYTVQILNVCVAGCSISNIHVRCGWFSSARLI 202

Query: 103 NPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLSVSSVIC 148
           NP++F+R+ ++DCLVN+G  L  G +LSF+YAN+F YPLSV SV C
Sbjct: 203 NPRLFRRIFFDDCLVNNGDALGPGESLSFQYANSFRYPLSVLSVSC 248


>GSVIVT01034993001 assembled CDS
          Length = 134

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 59/79 (74%)

Query: 68  GIPTYTVEIMNVCVTGCDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGG 127
           GIP Y V+I+N CV+GC  S IHL CGWF+SAR++NP+IFKRL Y+DCLVN GKPL    
Sbjct: 53  GIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARIVNPRIFKRLFYDDCLVNGGKPLKTSQ 112

Query: 128 TLSFEYANTFHYPLSVSSV 146
            + F Y+N+F YPL+  S 
Sbjct: 113 IIRFTYSNSFMYPLAFKSA 131


>GSVIVT01031688001 assembled CDS
          Length = 123

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 32  LLCTALAMEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVTGCDISGIHL 91
           LL T L     ++  G KC+     +NQ  T       P + VE+ N C   C +  +H+
Sbjct: 9   LLWTFLTFASLHQGKGAKCSADGPTVNQ--TQVGFGNPPKFMVEVHNNCAM-CPVIDVHI 65

Query: 92  TCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLSVS 144
            CG FS A L++P++FK L +++C+VN G PL      SF Y++   YP+S S
Sbjct: 66  KCGNFSQA-LVSPRLFKVLGHDNCVVNAGLPLPPLQKFSFNYSHQ-KYPMSPS 116