Jatropha Genome Database
- JcCB0397941.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0397941.10 - phase: 0
(94 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01028236001 assembled CDS 109 3e-25
GSVIVT01009676001 assembled CDS 62 4e-11
GSVIVT01006619001 assembled CDS 59 5e-10
GSVIVT01017237001 assembled CDS 58 1e-09
GSVIVT01006618001 assembled CDS 57 2e-09
GSVIVT01015485001 assembled CDS 52 4e-08
GSVIVT01014905001 assembled CDS 50 3e-07
GSVIVT01000506001 assembled CDS 50 3e-07
GSVIVT01035466001 assembled CDS 50 3e-07
GSVIVT01014894001 assembled CDS 49 5e-07
GSVIVT01031038001 assembled CDS 48 1e-06
GSVIVT01014943001 assembled CDS 47 1e-06
GSVIVT01014890001 assembled CDS 47 2e-06
GSVIVT01000499001 assembled CDS 47 2e-06
GSVIVT01037154001 assembled CDS 46 4e-06
GSVIVT01014981001 assembled CDS 46 4e-06
GSVIVT01015099001 assembled CDS 45 5e-06
>GSVIVT01028236001 assembled CDS
Length = 521
Score = 109 bits (272), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 67/90 (74%)
Query: 5 VGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMD 64
+ I +V+ TV+ +S IW++ +I W+PY +TR FR+QG+ GPPY + SGSL++ +RLK
Sbjct: 4 LAIALVSFTVIFISIIWQICRILFWRPYVVTRCFRKQGIRGPPYSVLSGSLHEIERLKNA 63
Query: 65 ATQTVLDTNSNDITPRVLPHYHKWCQQYGE 94
A +VL+T+SNDI RV+PHYH+W YG+
Sbjct: 64 ARGSVLETSSNDIIQRVVPHYHRWSLDYGD 93
>GSVIVT01009676001 assembled CDS
Length = 501
Score = 62.4 bits (150), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 20 IWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMDATQTVLDTNSNDITP 79
+++ V IW P+ + + FR QG+ GP Y SG++ +++R+ +A + +DI
Sbjct: 14 VFKFVHSIIWVPWRIQQHFRTQGIGGPGYRPISGNVGEFQRMYSEAQSKSMSGLQHDILH 73
Query: 80 RVLPHYHKWCQQYGE 94
RVLPHY +W YG+
Sbjct: 74 RVLPHYSRWSGAYGK 88
>GSVIVT01006619001 assembled CDS
Length = 557
Score = 58.5 bits (140), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 1 MGYDVGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKR 60
M Y I V + VV IW W+P +L + RRQG+ G Y L G K+
Sbjct: 55 MAYSFAILTVYTLLRVVYSIW-------WRPKSLEKQLRRQGIRGTHYKLLFGDAKAMKQ 107
Query: 61 LKMDATQTVLDTNSNDITPRVLPHYHKWCQQYGE 94
M+A + N + I PRV+P YH+ Q+YG+
Sbjct: 108 SFMEARSKPMALN-HSIVPRVIPFYHEMAQKYGK 140
>GSVIVT01017237001 assembled CDS
Length = 510
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 8 FMVALTVL-VVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMDAT 66
FM + VL VV +W W+P + + F +QG+ GPPY F G++ + L + +
Sbjct: 15 FMALVFVLKVVDYLW-------WRPKRIEKHFSKQGIRGPPYQFFIGNIKEIVGLTLKTS 67
Query: 67 QTVLDTNSNDITPRVLPHYHKWCQQYG 93
+ + ++I PRVL YH W + YG
Sbjct: 68 SQPMPLSDHNILPRVLSFYHHWKKIYG 94
>GSVIVT01006618001 assembled CDS
Length = 513
Score = 56.6 bits (135), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 1 MGYDVGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKR 60
M Y I + VV +W W+P +L + RRQG+ G Y L G K+
Sbjct: 11 MAYSFAILTMYTLSRVVYSVW-------WRPKSLEKQLRRQGIRGTRYKLLFGDAKAMKQ 63
Query: 61 LKMDATQTVLDTNSNDITPRVLPHYHKWCQQYGE 94
M+A + N + I PRVLP YH+ Q+YG+
Sbjct: 64 SFMEARSKPMALN-HSIVPRVLPFYHEIAQKYGK 96
>GSVIVT01015485001 assembled CDS
Length = 542
Score = 52.4 bits (124), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 29 WKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMDATQTVLDTNSNDITPRVLPHYHKW 88
W+P + F +QG+ GPPY F G++ + L + A+ + S++I PRVL YH W
Sbjct: 30 WRPRKIEHHFSKQGIRGPPYRFFIGNVKELVGLMLKASSQPMPF-SHNILPRVLSFYHHW 88
Query: 89 CQQYG 93
+ YG
Sbjct: 89 KKIYG 93
>GSVIVT01014905001 assembled CDS
Length = 235
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 4 DVGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKM 63
V I LTVL+ S +WRL+ +P L R R QG++G Y L G + +
Sbjct: 5 SVAISFGFLTVLI-SCLWRLLNWVWLRPKRLERCLREQGLAGNSYRLLHGDFKEMSMMLK 63
Query: 64 DATQTVLDTNSNDITPRVLPHYHKWCQQYGE 94
+A + S+D TPRVLP + + ++YG+
Sbjct: 64 EAYSRPISL-SDDTTPRVLPFHFHFIKKYGK 93
>GSVIVT01000506001 assembled CDS
Length = 417
Score = 49.7 bits (117), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 5 VGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMD 64
V I LTVL+ S +WRL+ +P L R R QG++G Y L G + + +
Sbjct: 6 VAISFGFLTVLI-SCLWRLLNWVWLRPKRLERCLREQGLAGNSYRLLHGDFKEMSMMLKE 64
Query: 65 ATQTVLDTNSNDITPRVLPHYHKWCQQYGE 94
A + S+DI PRVLP + + ++YG+
Sbjct: 65 AYSRPISL-SDDIAPRVLPFHCHFIKKYGK 93
>GSVIVT01035466001 assembled CDS
Length = 512
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 11 ALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMDATQTVL 70
+ +LVV + R V W+P +L + R+QG+ G Y G + K L Q+
Sbjct: 12 SFAILVVYGLLRAVYTIWWRPKSLEKQLRQQGIRGTRYKPMYGDMKALK-LSFQEAQSKP 70
Query: 71 DTNSNDITPRVLPHYHKWCQQYGE 94
T ++ I PRV+P +H+ Q YG+
Sbjct: 71 MTLNHSIVPRVIPFFHQMFQNYGK 94
>GSVIVT01014894001 assembled CDS
Length = 550
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 4 DVGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKM 63
V I LTVL+ S +WRL+ +P L R R QG++G Y L G + R+
Sbjct: 5 SVAISFGFLTVLI-SCVWRLLNWVWLRPKRLERCLREQGLAGNSYRLLQGDSKEMSRMMK 63
Query: 64 DATQTVLDTNSNDITPRVLPHYHKWCQQYGE 94
+A + S+DI RVLP + + ++YG+
Sbjct: 64 EAYSRPISL-SDDIVQRVLPFHCHFIKKYGK 93
>GSVIVT01031038001 assembled CDS
Length = 515
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 31 PYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMDATQTVLDTNSNDITPRVLPHYHKWCQ 90
P + + QGV GP G++ D L +T T +D+ S+D R+LPH+ W +
Sbjct: 31 PRRIKKIMENQGVRGPKPRFLVGNIMDMAALVSKSTSTDMDSISHDTVGRLLPHFVAWSK 90
Query: 91 QYGE 94
QYG+
Sbjct: 91 QYGK 94
>GSVIVT01014943001 assembled CDS
Length = 505
Score = 47.4 bits (111), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 5 VGIFMVALTVLVVSKIWRLVKISIW-KPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKM 63
V I +T+L+ + WRL+ S+W KP + R R+QG+ G Y L G + R+ +
Sbjct: 6 VAISFAFITLLIYA--WRLLN-SVWLKPKKIERYLRQQGLIGNSYRLLHGDFREMSRM-I 61
Query: 64 DATQTVLDTNSNDITPRVLP-HYHKWCQQYGE 94
D + + S+DI RVLP HYH ++YG+
Sbjct: 62 DEANSRPISLSDDIVQRVLPFHYHS-IKKYGK 92
>GSVIVT01014890001 assembled CDS
Length = 470
Score = 46.6 bits (109), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 1 MGYDVGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKR 60
+ YD + A +L ++ WR + +P L R RRQG+ G Y G
Sbjct: 3 IAYDSVLIFCAFALLSLA--WRAFYLVWLRPRRLERCLRRQGLMGNSYRPLHGDAKKVSI 60
Query: 61 LKMDATQTVLDTNSNDITPRVLPHYHKWCQQYGE 94
+ +A ++ S+DI PRV+P +K QQYG+
Sbjct: 61 MLKEANSRPINL-SDDIVPRVIPFLYKTIQQYGK 93
>GSVIVT01000499001 assembled CDS
Length = 529
Score = 46.6 bits (109), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 5 VGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMD 64
V I +T+L+ + WRL+ +P L R R+QG++G Y L G + + R+ +
Sbjct: 19 VAISFAFITLLIYA--WRLLNWVWLRPKKLERCLRQQGITGNSYRLLHGDVREMLRMISE 76
Query: 65 ATQTVLDTNSNDITPRVLP-HYHKWCQQYGE 94
A + S++I RVLP HYH ++YG+
Sbjct: 77 ANSRPISL-SDEIVQRVLPFHYHS-LKKYGK 105
>GSVIVT01037154001 assembled CDS
Length = 470
Score = 45.8 bits (107), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 2 GYDVGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRL 61
+ V +F+ V V+ +RL + KP L R QG+SGPP G++ + K
Sbjct: 3 AFTVKLFISIALVGVLGLFFRLYNALVVKPKKLRSILRNQGISGPPPSFLLGNIREIKES 62
Query: 62 KMDATQTVLDTNSNDITPRVLPHYHKWCQQYGE 94
+ A + T++++ + P + KW +YG+
Sbjct: 63 QSTAVKDSC-TDTHNCAAALFPFFEKWRNKYGQ 94
>GSVIVT01014981001 assembled CDS
Length = 349
Score = 45.8 bits (107), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 5 VGIFMVALTVLVVSKIWRLVKISIWKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMD 64
V I +T+L+ + WRL+ +P L R R+QG++G Y L G + + R+ +
Sbjct: 30 VAISFAFITLLIYA--WRLLNWVWLRPKKLERCLRQQGITGNSYRLLHGDVREMLRMISE 87
Query: 65 ATQTVLDTNSNDITPRVLPHYHKWCQQYG 93
A + S++I RVLP ++ ++YG
Sbjct: 88 ANSRPISL-SDEIVQRVLPFHYHSLKKYG 115
>GSVIVT01015099001 assembled CDS
Length = 471
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 29 WKPYALTRSFRRQGVSGPPYYLFSGSLNDWKRLKMDATQTVLDTNSNDITPRVLPHYHKW 88
WKP L + R+QG+ G PY L G + ++ RL +A ++ N + I RV P
Sbjct: 30 WKPKWLEKRLRQQGIRGTPYKLVMGDMKEYIRLITEAWSKPMNLNHH-IVSRVDPFTQNN 88
Query: 89 CQQYGE 94
QQYG+
Sbjct: 89 MQQYGK 94