Jatropha Genome Database

JcCB0397691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0397691.10 - phase: 1 /partial
         (232 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008673001 assembled CDS                                       408   e-114
GSVIVT01033801001 assembled CDS                                       293   5e-80
GSVIVT01037695001 assembled CDS                                       172   2e-43

>GSVIVT01008673001 assembled CDS
          Length = 840

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/235 (82%), Positives = 210/235 (89%), Gaps = 4/235 (1%)

Query: 2   HGIYWEF----NEYFSEATYVDAVVYLMLANSLIHNTLPDATVIAEDVSGMPGLGHDVSE 57
           HG+   F    NEYFSEAT VDAVVYLMLAN LIH   PDATV AEDVSGMPGLG  V+E
Sbjct: 439 HGVNMTFTGNYNEYFSEATDVDAVVYLMLANCLIHKIFPDATVSAEDVSGMPGLGRPVAE 498

Query: 58  GGIGFDYRLAMAIPDKWIDYLKNKSDEEWSMEEIAWSLTNRRYTEKCVAYAESHDQAIVG 117
           GG GFDYRLAMAIPDKWIDYLKNK DEEWSM+EI+ SLTNRRY EKC++YAESHDQA+VG
Sbjct: 499 GGTGFDYRLAMAIPDKWIDYLKNKKDEEWSMKEISSSLTNRRYAEKCISYAESHDQALVG 558

Query: 118 DKTVAFLLMDKEMYSGMSCLTDAPPIIERGIALHKMVHFLTMALGGEGYLNFMGNEFGHP 177
           DKT+AFLLMDKEMYSGMSCLTDA P I+RGI+LHKM+HF+TMALGGEG+LNFMGNEFGHP
Sbjct: 559 DKTIAFLLMDKEMYSGMSCLTDASPTIDRGISLHKMIHFITMALGGEGFLNFMGNEFGHP 618

Query: 178 EWIDFPREGNGWSYDKCRRQWNLVDTEHLRYKFMNAFDRAMNGLDEKYSFLASTK 232
           EWIDFPREGN WSY+KCRRQW LVDT+HLRYK+MNAFD AMN LDEK+SFLASTK
Sbjct: 619 EWIDFPREGNDWSYEKCRRQWELVDTDHLRYKYMNAFDTAMNLLDEKFSFLASTK 673


>GSVIVT01033801001 assembled CDS
          Length = 859

 Score =  293 bits (749), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/244 (60%), Positives = 175/244 (71%), Gaps = 16/244 (6%)

Query: 2   HGIYWEF----NEYFSEATYVDAVVYLMLANSLIHNTLPDATVIAEDVSGMPGLGHDVSE 57
           HG+  EF    NEYF  AT VDA+VYLML N LIH   P+A  I EDVSGMP     V +
Sbjct: 510 HGLQVEFTGNYNEYFGYATDVDAMVYLMLVNDLIHGLFPEAVTIGEDVSGMPAFCIPVQD 569

Query: 58  GGIGFDYRLAMAIPDKWIDYLKNKSDEEWSMEEIAWSLTNRRYTEKCVAYAESHDQAIVG 117
           GG+GFDYRL MAI DKWI+ LK K DE W M +I  +LTNRR+ EKCVAYAESHDQA+VG
Sbjct: 570 GGVGFDYRLHMAIADKWIELLK-KPDEYWKMGDIIHTLTNRRWLEKCVAYAESHDQALVG 628

Query: 118 DKTVAFLLMDKEMYSGMSCLTDAPPIIERGIALHKMVHFLTMALGGEGYLNFMGNEFGHP 177
           DKT+AF LMDK+MY  M+      P I+RGIALHKM+  +TM LGGEGYLNFMGNEFGHP
Sbjct: 629 DKTIAFWLMDKDMYEFMALDRPTTPAIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHP 688

Query: 178 EWIDFPRE-----------GNGWSYDKCRRQWNLVDTEHLRYKFMNAFDRAMNGLDEKYS 226
           EWIDFPR            GN +S+DKCRR+++L D E+LRY+ +  FD+AM  L+EKY 
Sbjct: 689 EWIDFPRGDQHLPNGKRILGNNFSFDKCRRRFDLGDAEYLRYRGLQEFDQAMQHLEEKYG 748

Query: 227 FLAS 230
           F+ S
Sbjct: 749 FMTS 752


>GSVIVT01037695001 assembled CDS
          Length = 896

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 7/224 (3%)

Query: 7   EFNEYFSEATYVDAVVYLMLANSLIHNTLPDATVIAEDVSGMPGLGHDVSEGGIGFDYRL 66
           +  EY ++    DA++YL+LAN ++H   P    IAED +  PGL    S+GG+GFDY +
Sbjct: 573 DLEEYCNQYVDKDALMYLILANEILHALHPKIVTIAEDATYYPGLCEPTSQGGLGFDYYV 632

Query: 67  AMAIPDKWIDYLKNKSDEEWSMEEIAWSLT-NRRYTEKCVAYAESHDQAIVGDKTVAFLL 125
            ++ PD W+D+L+N  D EWSM +I  +L  NR+Y +K + YAE+H+Q+I G ++ A +L
Sbjct: 633 NLSAPDMWLDFLENIPDHEWSMSKIVSTLIGNRQYADKMLVYAENHNQSISGGRSFAEIL 692

Query: 126 MDKEMYSGMSCLTDAPPIIERGIALHKMVHFLTMALGGEGYLNFMGNEFGHPEWIDFPRE 185
                   +S  T     + RG +LHKM+  +T+ +GG  YLNFMGNEFGHP+ I+FP  
Sbjct: 693 FGAIKEDPLSSKT----TLLRGCSLHKMIRLITLTIGGHAYLNFMGNEFGHPKRIEFPMP 748

Query: 186 GNGWSYDKCRRQWNLVDTEHLRYKFMNAFDRAMNGLDEKYSFLA 229
            N +S     R W+L++ E     F  +FD+ M  L E    L+
Sbjct: 749 SNNFSLSLANRCWDLLENEVHHNLF--SFDKDMMKLGENERSLS 790