Jatropha Genome Database

JcCB0396881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0396881.10 + phase: 0 /pseudo/partial
         (92 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014301001 assembled CDS                                        81   1e-16
GSVIVT01020581001 assembled CDS                                        79   4e-16
GSVIVT01034268001 assembled CDS                                        76   3e-15
GSVIVT01021698001 assembled CDS                                        74   2e-14
GSVIVT01004849001 assembled CDS                                        70   2e-13
GSVIVT01009035001 assembled CDS                                        67   2e-12
GSVIVT01038792001 assembled CDS                                        54   2e-08
GSVIVT01028710001 assembled CDS                                        51   1e-07
GSVIVT01009984001 assembled CDS                                        46   4e-06

>GSVIVT01014301001 assembled CDS
          Length = 283

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 26 HGYHMVRGKMGHGMEDYLVAESREINGYRLGLYAIFDGHSGLDVAKYLQSHLFDNLLNE 84
          HGYH+V+GK  H MEDY+VA+ ++++   LGL+AIFDGH   D+  YL+SHLFDN+L E
Sbjct: 36 HGYHLVKGKSNHAMEDYVVAQFKKVDDKELGLFAIFDGHLSHDIPNYLRSHLFDNILTE 94


>GSVIVT01020581001 assembled CDS
          Length = 283

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 26 HGYHMVRGKMGHGMEDYLVAESREINGYRLGLYAIFDGHSGLDVAKYLQSHLFDNLLNE 84
          HG+H+V+GK  H MED LV+E +++  + LGL+ IFDGH G DV+ YL++HLFDN+L E
Sbjct: 36 HGFHLVKGKSNHEMEDCLVSEFKQVEDHELGLFGIFDGHLGHDVSNYLKTHLFDNILKE 94


>GSVIVT01034268001 assembled CDS
          Length = 285

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 42/59 (71%)

Query: 26 HGYHMVRGKMGHGMEDYLVAESREINGYRLGLYAIFDGHSGLDVAKYLQSHLFDNLLNE 84
          HG+H+V GK GH MEDY VAE R    + LGL+AIFDGH G  V  YL+ +LF+N+L E
Sbjct: 38 HGFHLVEGKSGHDMEDYHVAEYRNKKSHVLGLFAIFDGHLGNSVPSYLKDNLFNNILEE 96


>GSVIVT01021698001 assembled CDS
          Length = 161

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 39/46 (84%)

Query: 39 MEDYLVAESREINGYRLGLYAIFDGHSGLDVAKYLQSHLFDNLLNE 84
          MEDY+VAE R+ING  LGLYAIFDGHSG  VA+YL SHLFDN+L +
Sbjct: 1  MEDYIVAEKRQINGNELGLYAIFDGHSGKQVAEYLHSHLFDNILQK 46


>GSVIVT01004849001 assembled CDS
          Length = 398

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query: 26  HGYHMVRGKMGHGMEDYLVAESREINGYRLGLYAIFDGHSGLDVAKYLQSHLFDNLLNE 84
           +G+ +V+GK  H MEDY VA+     G+ LGL+AI+DGH G  V  YLQ HLF N+L E
Sbjct: 101 YGFSLVKGKANHPMEDYHVAKFHHTKGHELGLFAIYDGHMGDSVPAYLQKHLFSNILKE 159


>GSVIVT01009035001 assembled CDS
          Length = 283

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 26 HGYHMVRGKMGHGMEDYLVAESREINGYRLGLYAIFDGHSGLDVAKYLQSHLFDNLLNE 84
          +G+ +V+GK  H MEDY VA+  +I  + LGL+AI+DGH G  V  YLQ HLF N+L E
Sbjct: 35 YGFSLVKGKANHPMEDYHVAKFVQIEEHELGLFAIYDGHLGDRVPLYLQKHLFSNILKE 93


>GSVIVT01038792001 assembled CDS
          Length = 236

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 32/46 (69%)

Query: 39 MEDYLVAESREINGYRLGLYAIFDGHSGLDVAKYLQSHLFDNLLNE 84
          MEDY VA+  +  G+ LGL+AI+DGH G  V  YLQ HLF N+L E
Sbjct: 1  MEDYHVAKFVQQQGHELGLFAIYDGHLGDSVPAYLQKHLFPNILKE 46


>GSVIVT01028710001 assembled CDS
          Length = 351

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 27  GYHMVRGKMGHGMEDYLVAESREINGYRLGLYAIFDGHSGLDVAKYLQSHLFDNLL 82
           GY   RGK    MED+   +  +I+G  + L+ IFDGH G   A++L+ HLF+NL+
Sbjct: 92  GYSSFRGKRA-SMEDFYDVKMSKIDGQTVCLFGIFDGHGGSRAAEFLKEHLFENLM 146


>GSVIVT01009984001 assembled CDS
          Length = 276

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 26 HGYHMVRGKMGHGMEDYLVAESREINGYRLGLYAIFDGHSGLDVAKYLQSHLFDNL 81
          +GY   +GK    MED+      E++G+ +  + +FDGH G   A+YL+++LF NL
Sbjct: 29 YGYSSFKGKR-PSMEDFYETRISEVDGHMVAFFGVFDGHGGSRTAEYLKNNLFKNL 83