Jatropha Genome Database

JcCB0394911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0394911.10 - phase: 0 /partial
         (473 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016716001 assembled CDS                                       471   e-133

>GSVIVT01016716001 assembled CDS
          Length = 1011

 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/453 (56%), Positives = 300/453 (66%), Gaps = 37/453 (8%)

Query: 1   AIESGRLPGDILDDIPRKYVNGTLICEVRDYRKCPPEQGSCIPSVGWLPIVNRVRLRMSL 60
           AIESGRLPGDILDDIP KYVNG L+CEVRDYRKC  E G  +P    LPIVN+V LRMSL
Sbjct: 133 AIESGRLPGDILDDIPCKYVNGALLCEVRDYRKCASEPGFSVPCADGLPIVNKVCLRMSL 192

Query: 61  ENVVKDIPLISDNSWTYGDLMEVESRILKALQPRLFLDPTPKLDRLCNNPTATXXXXXXX 120
           ENVVKDIPLISDNSWTYGDLMEVESRILKALQP+L LDP+PKLDRLC  P          
Sbjct: 193 ENVVKDIPLISDNSWTYGDLMEVESRILKALQPQLCLDPSPKLDRLCEKPVPAKLNLSLS 252

Query: 121 XXXXXXXXQMPEVTVTSSSRIHGKKVCIDRVLESSNSRLGDSGMISGNMMPQSVQENLTT 180
                   QMPE  +TSS++IH KK+ +DR  ES N RL DSG +SG +M Q V ENL  
Sbjct: 253 SVRKKRLRQMPEANITSSNKIHVKKISMDRAGESLNGRLRDSGPMSGAVMAQHVHENLAA 312

Query: 181 QNLVP-NMLPLRARSFVSDGNVSALPLVSQQSRYQLGLGTPRSMQDQGSGSLVNIPGASP 239
           QN+ P N+L    +SFV D +  ALPL S +S+YQ+ +G P+ MQD GSGS+VN  GAS 
Sbjct: 313 QNVGPINILTPGPKSFVQDASNPALPLASPRSKYQVSVGNPKIMQDHGSGSVVNASGASS 372

Query: 240 AGQDMMITYGDHINSGASLHGKRENQDGQMSPLSSFNKRARVTSVGPDGMQQQQLGPHID 299
           + QDMMI+Y D++      HGKRENQD Q+SPLS+  KR R+T+VGP+G+QQQ L PHID
Sbjct: 373 SIQDMMISYTDNV------HGKRENQDDQLSPLSNMTKRQRLTAVGPEGIQQQHLVPHID 426

Query: 300 GLHASDMNWKN-SLLPHQATARGIHYANTGIQKYPQQVFEGVMNQNAMPTSFSAPQQGVR 358
             H SD+ WKN +LLPHQ  ARG  YANTGIQKYPQQVF+GV+NQ A   SF+       
Sbjct: 427 SFHGSDLQWKNAALLPHQLNARGNPYANTGIQKYPQQVFDGVLNQEAASASFA------- 479

Query: 359 FGPKEEQFETEKLDVSELNQGKNDMM--DTEMGHXXXXXXXXXXXXXXXX--MRSNFSQT 414
                   ETEKLD  ELN+ KNDM   + E  H                  MRSN  Q 
Sbjct: 480 --------ETEKLDRPELNRVKNDMHMGEIESNHLDPQQSRLQSRLPQQIPFMRSNSFQA 531

Query: 415 AWNNLSQ----DSRKEEQIQGKRKTVQSPRLSA 443
            WNN++Q    D RKE      RK VQSPR+SA
Sbjct: 532 PWNNITQHIEKDPRKE------RKLVQSPRVSA 558