Jatropha Genome Database

JcCB0393011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0393011.10 + phase: 0 
         (67 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032673001 assembled CDS                                        86   4e-18

>GSVIVT01032673001 assembled CDS
          Length = 559

 Score = 85.5 bits (210), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 1   MQLHCDHGLQGFQWNTIFGFQHQETSENYTRIGKADSSERELAVRAAAASIYSTCSFLMS 60
           MQ+HC+ GLQ FQWN +  +QH  T  N  R    D SERELA+RAAAASIYSTC+FL+S
Sbjct: 494 MQMHCERGLQHFQWN-LPHWQHPGTIINDPRPQMVDDSERELAIRAAAASIYSTCNFLLS 552

Query: 61  KENVSCF 67
            ENVSCF
Sbjct: 553 MENVSCF 559