Jatropha Genome Database

JcCB0392311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0392311.10 + phase: 0 
         (143 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021514001 assembled CDS                                       113   3e-26
GSVIVT01021516001 assembled CDS                                       112   8e-26
GSVIVT01007188001 assembled CDS                                       100   2e-22
GSVIVT01021519001 assembled CDS                                        96   8e-21
GSVIVT01021518001 assembled CDS                                        79   6e-16
GSVIVT01000967001 assembled CDS                                        49   6e-07

>GSVIVT01021514001 assembled CDS
          Length = 127

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 81/135 (60%), Gaps = 15/135 (11%)

Query: 2   RRNCNLELRLFPFPDSD----DDHRRYFVDESNKSPXXXXXXXXXXXXXXXKLTIFYNGN 57
           RRNCNLELRL P P++D      H    ++    SP               +LTIFYNG 
Sbjct: 3   RRNCNLELRLLP-PNTDYSSPQHHHNMMMETGRGSPQEQQQQQ--------QLTIFYNGR 53

Query: 58  ICVCDVTELQARNILMLASREMDDKIRSAXXXXXXXXXXXXXXVYSPNNGLSMKRSLQRF 117
           ICVCDVTELQAR IL+LASREM++K R+               +YS   GLSMKRSLQRF
Sbjct: 54  ICVCDVTELQARAILLLASREMEEKTRTP-TASDATSPSLHSQLYS-ATGLSMKRSLQRF 111

Query: 118 LQKRNHRIQATYPYN 132
           LQKR +R++AT PY+
Sbjct: 112 LQKRKNRMEATSPYH 126


>GSVIVT01021516001 assembled CDS
          Length = 127

 Score =  112 bits (279), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 80/135 (59%), Gaps = 15/135 (11%)

Query: 2   RRNCNLELRLFPFPDSD----DDHRRYFVDESNKSPXXXXXXXXXXXXXXXKLTIFYNGN 57
           R NCNLE+RL P P++D      H    ++    SP               +LTIFYNG 
Sbjct: 3   RSNCNLEVRLLP-PNTDYSSPQHHHNMMMETGRGSPQEQQQRQ--------QLTIFYNGR 53

Query: 58  ICVCDVTELQARNILMLASREMDDKIRSAXXXXXXXXXXXXXXVYSPNNGLSMKRSLQRF 117
           ICVCDVTELQAR IL LASREM++K R+               +YSP  GLSMKRSLQRF
Sbjct: 54  ICVCDVTELQARAILQLASREMEEKTRTP-TASDAISSSLHSQLYSP-TGLSMKRSLQRF 111

Query: 118 LQKRNHRIQATYPYN 132
           LQKR +R++AT PY+
Sbjct: 112 LQKRKNRMEATSPYH 126


>GSVIVT01007188001 assembled CDS
          Length = 98

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 60/83 (72%), Gaps = 2/83 (2%)

Query: 50  LTIFYNGNICVCDVTELQARNILMLASREMDDKIRSAXXXXXXXXXXXXXXVYSPNNGLS 109
           LTIFYNG ICVCDVTELQAR IL+ ASREM++K R+               +YSP  GLS
Sbjct: 17  LTIFYNGRICVCDVTELQARAILLFASREMEEKTRTP-TASDAISPSLHSQIYSP-TGLS 74

Query: 110 MKRSLQRFLQKRNHRIQATYPYN 132
           MKRSLQRFLQKR +R++AT PY+
Sbjct: 75  MKRSLQRFLQKRKNRMEATSPYH 97


>GSVIVT01021519001 assembled CDS
          Length = 130

 Score = 95.5 bits (236), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 73/130 (56%), Gaps = 13/130 (10%)

Query: 3   RNCNLELRLFPFPDSDDDHRRYFVDESNKSPXXXXXXXXXXXXXXXKLTIFYNGNICVCD 62
           RNCNLEL L P   S     +  ++    SP               +LTIFY+G +CVC+
Sbjct: 13  RNCNLELSLLP---STAYRHKMMMEMGRGSPQEQQQQQ--------QLTIFYDGRVCVCE 61

Query: 63  VTELQARNILMLASREMDDKIRSAXXXXXXXXXXXXXXVYSPNNGLSMKRSLQRFLQKRN 122
           VTELQAR I++ ASRE++ K  +A              +YSP  GLSMKRSL+ FLQKR 
Sbjct: 62  VTELQARAIILTASREVETKTPTA-SDVTMVSPSLQSQLYSP-TGLSMKRSLRSFLQKRK 119

Query: 123 HRIQATYPYN 132
           +RI+AT PY 
Sbjct: 120 NRIEATSPYG 129


>GSVIVT01021518001 assembled CDS
          Length = 96

 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 7/83 (8%)

Query: 50  LTIFYNGNICVCDVTELQARNILMLASREMDDKIRSAXXXXXXXXXXXXXXVYSPNNGLS 109
           LTIFYNG ICV DVTEL+AR I++ ASREM+++ R+               +  P +G+S
Sbjct: 20  LTIFYNGRICVSDVTELRARAIILAASREMEERKRAP------LSPSMQSQLCGP-SGVS 72

Query: 110 MKRSLQRFLQKRNHRIQATYPYN 132
           MKRSL RFLQKR +R +A  PYN
Sbjct: 73  MKRSLHRFLQKRKNRREAMSPYN 95


>GSVIVT01000967001 assembled CDS
          Length = 212

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 50  LTIFYNGNICVCDVTELQARNILMLASREMDDKIRSAXXXXXXXXXXXXXXVYSPNNGLS 109
           +TIFYNG + V DV+  Q  +I+ LA       +  A              + + N  L 
Sbjct: 107 ITIFYNGTVSVFDVSPEQIESIMKLALDGSTKTVEPADSKLAIPPNEEQQLLETLNGDLP 166

Query: 110 MKR--SLQRFLQKRNHRIQATYPY 131
           + R  SL RFL+KR  R+ + YPY
Sbjct: 167 LARRKSLHRFLEKRKERLTSVYPY 190