Jatropha Genome Database

JcCB0391201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0391201.10 + phase: 1 /partial
         (221 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035095001 assembled CDS                                       362   e-101
GSVIVT01035853001 assembled CDS                                        73   1e-13
GSVIVT01023350001 assembled CDS                                        68   3e-12
GSVIVT01008734001 assembled CDS                                        67   7e-12
GSVIVT01027587001 assembled CDS                                        64   5e-11
GSVIVT01016876001 assembled CDS                                        64   8e-11
GSVIVT01019879001 assembled CDS                                        62   3e-10
GSVIVT01005195001 assembled CDS                                        61   4e-10
GSVIVT01017317001 assembled CDS                                        60   7e-10
GSVIVT01015543001 assembled CDS                                        58   3e-09
GSVIVT01015542001 assembled CDS                                        57   6e-09

>GSVIVT01035095001 assembled CDS
          Length = 1121

 Score =  362 bits (929), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 170/209 (81%), Positives = 190/209 (90%)

Query: 13   LQGGLDDSGAASVRAIMHWQYRTICRGHRSILHNLFDVLGPKTHDYISFYGLRAHGQLFE 72
             QGGLDD GAASVRAIMHWQYRTICRG+ SIL NL+DV+G KTHDYISFYGLRA+G+LF+
Sbjct: 851  FQGGLDDGGAASVRAIMHWQYRTICRGNNSILQNLYDVIGHKTHDYISFYGLRAYGRLFD 910

Query: 73   GGPVATSQVYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEIGILIEDKEFVDSSMGGK 132
            GGPVA+SQVYVHSKIMI+DDC TLIGSANINDRSLLGSRDSEIG+LIEDKE VDS MGGK
Sbjct: 911  GGPVASSQVYVHSKIMIVDDCTTLIGSANINDRSLLGSRDSEIGVLIEDKELVDSYMGGK 970

Query: 133  PWKAGKFSLSLRLSLWSEHLGRHAKEMSRIMDPIIDSTYKDMWVATAKTNTTIYQDVFSC 192
            P KAGKF+ SLRLSLWSEHLG    E+ +I DP++DSTY+D+W+ATAKTN+TIYQDVFSC
Sbjct: 971  PKKAGKFAHSLRLSLWSEHLGLRGGEIDQIKDPVVDSTYRDVWMATAKTNSTIYQDVFSC 1030

Query: 193  IPNDLIHSRAALRQSMAFWKDKLNHTTID 221
            IPNDLIHSRAA+RQ MA WK+KL HTTID
Sbjct: 1031 IPNDLIHSRAAMRQHMAIWKEKLGHTTID 1059


>GSVIVT01035853001 assembled CDS
          Length = 752

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 29/171 (16%)

Query: 7   FTEFLVLQ---GGLDDSGAASVRAIMHWQYRTICRGHRSILHNL-FDVLGPKTHDYISFY 62
           FT ++V+     G+ +S  ASV+AI+ WQ RT+   +  I+  L    +     DY++F+
Sbjct: 506 FTVYIVIPLWPEGIPES--ASVQAILDWQRRTMEMMYTDIVQALQARGIHANPRDYLTFF 563

Query: 63  GL-----------RAHGQLFEGGPVATSQ------VYVHSKIMIIDDCATLIGSANINDR 105
            L           +   +  EG     +Q      +YVHSK+MI+DD   +IGSANIN R
Sbjct: 564 CLGNRELINADEYKPKEKPAEGSDYMRAQQSRRFMIYVHSKMMIVDDEYIIIGSANINQR 623

Query: 106 SLLGSRDSEIGI-LIEDKEFVDSSMGGKPWKAGKFSLSLRLSLWSEHLGRH 155
           S+ G RD+EI +   +      +  GG+    G      RL+LW EHLG H
Sbjct: 624 SMDGGRDTEIAMGGYQPHHLAATEEGGRGAIHG-----FRLALWYEHLGGH 669


>GSVIVT01023350001 assembled CDS
          Length = 842

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 73/152 (48%), Gaps = 23/152 (15%)

Query: 22  AASVRAIMHWQYRTICRGHRSILHNLFDVLGPKTH---DYISFYGLRAHGQLFEGGPVAT 78
           +ASV+ I+ WQ +T+   ++ I   +       TH   DY++FY L             T
Sbjct: 611 SASVQEILFWQGQTMSMMYQIIGQAIHKAGLSDTHHPQDYLNFYCLGKREASSTESSAQT 670

Query: 79  SQ-----------------VYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEIGILIED 121
           S                  +YVH+K MI+DD   LIGSANIN RSL GSRD+EI +    
Sbjct: 671 SNSSENRALGLAQKFRRFMIYVHAKGMIVDDEYVLIGSANINQRSLDGSRDTEIAMGAYQ 730

Query: 122 KEFVDSSMGGKPWKAGKFSLSLRLSLWSEHLG 153
             +  S  G K    G+     R+SLW+EHLG
Sbjct: 731 PSYTWS--GKKTHPHGQV-YGYRMSLWAEHLG 759


>GSVIVT01008734001 assembled CDS
          Length = 823

 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 24/154 (15%)

Query: 19  DSGAASVRAIMHWQYRTICRGHRSILHNLFDVLGPKTH--DYISFYGL-----------R 65
           +   ASV+ I+ WQ +T+   +  I   L  +     H  DY++FY L            
Sbjct: 592 NPSCASVQEILFWQGQTMQMMYDIIAQELQSMQLEDAHPQDYLNFYCLGNREEPPKEVSS 651

Query: 66  AHGQLFEGGPVATSQ------VYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEIGILI 119
           ++ Q  +G  V+TS+      +YVH+K MI+DD   ++GSANIN RS+ GSRD+EI +  
Sbjct: 652 SNTQASDG--VSTSKKFHRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTEIAMGA 709

Query: 120 EDKEFVDSSMGGKPWKAGKFSLSLRLSLWSEHLG 153
                  +     P   G+     R+SLW+EHLG
Sbjct: 710 YQPRHTWAKKKKHP--HGQI-YGYRMSLWAEHLG 740


>GSVIVT01027587001 assembled CDS
          Length = 940

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 31/158 (19%)

Query: 20  SGAASVRAIMHWQYRTICRGHRSILHNLFDV-----LGPKTHDYISFYGLRAHGQLFEGG 74
           +GAA+ R I+ WQ++T+   + +I   L +V       P+  DY++F+ L  + +  +G 
Sbjct: 707 TGAATQR-ILFWQHKTMQMMYETIYKALVEVGLEEAFTPQ--DYLNFFCL-GNREAVDGS 762

Query: 75  -------------PVATSQ------VYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEI 115
                        P A S+      +YVHSK MI+DD   ++GSANIN RS+ G+RD+EI
Sbjct: 763 ETPGTTSPTAANTPQAHSRKNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEI 822

Query: 116 GILIEDKEFVDSSMGGKPWKAGKFSLSLRLSLWSEHLG 153
            +      +  +     P   G+     R+SLW+EH G
Sbjct: 823 AMGAYQPHYTWARKLSNP--RGQI-YGYRMSLWAEHTG 857


>GSVIVT01016876001 assembled CDS
          Length = 950

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 26/145 (17%)

Query: 28  IMHWQYRTICRGHRSILHNLFDVLGPKTH--DYISFYGLRAHGQLFEG------GPVATS 79
           I+HW   T+   +R ++    D  G   H  DY++F+ L    +  +G       P   +
Sbjct: 728 ILHWTRETMAMMYR-LIGEAIDENGGSGHPRDYLNFFCLANREEKGKGEYASPHPPHPAT 786

Query: 80  Q-----------VYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEIGILIEDKEFVDSS 128
           Q           VYVHSK+MI+DD   LIGSAN+N RS+ G RD+EI +     +  ++ 
Sbjct: 787 QYWNAQKHRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGQRDTEIAVGCYQSKNGENE 846

Query: 129 MGGKPWKAGKFSLSLRLSLWSEHLG 153
           M      A       R+SLW EH G
Sbjct: 847 MCRGDIHA------YRMSLWYEHTG 865


>GSVIVT01019879001 assembled CDS
          Length = 839

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 22/151 (14%)

Query: 22  AASVRAIMHWQYRTICRGHRSILHNLFDV-LGPKTH--DYISFYGL----------RAHG 68
           +   + I+ WQ++T+   +  +   L +V L  + H  DY++F+ L           A  
Sbjct: 609 STPTQRILFWQHKTMQMMYEMVYKALQEVGLENQYHPQDYLNFFCLGNREEGVDTSNAGN 668

Query: 69  QLFEGGPVATSQ------VYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEIGILIEDK 122
           Q     P A ++      +YVHSK MI+DD   +IGSANIN RS+ G+RD+EI +     
Sbjct: 669 QSAANTPQALARKSRRFMIYVHSKGMIVDDEYLIIGSANINQRSMEGTRDTEIAMGAYQP 728

Query: 123 EFVDSSMGGKPWKAGKFSLSLRLSLWSEHLG 153
               +     P   G+     R+SLW+EH G
Sbjct: 729 HHTWARKQSSP--HGQI-YGYRMSLWAEHTG 756


>GSVIVT01005195001 assembled CDS
          Length = 1607

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 23/155 (14%)

Query: 19   DSGAASVRAIMHWQYRTICRGHRSILHNLFDVLGPKTH--DYISFYGL------------ 64
            D  + +V+ I+ WQ +T+   +  I   L  +    +H  DY++FY L            
Sbjct: 1372 DPKSNTVQEILFWQAQTMQMMYEVIAKELKSMQLEDSHPLDYLNFYCLGNREGVTKEMSE 1431

Query: 65   RAHGQLFEGGPVATS------QVYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEIGIL 118
            +A         V  S       +YVH+K MI+DD   ++GSANIN RS+ G++D+EI + 
Sbjct: 1432 KASPTPANADAVLASAKFRRFMIYVHAKGMIVDDEYLIMGSANINQRSMAGTKDTEIAMG 1491

Query: 119  IEDKEFVDSSMGGKPWKAGKFSLSLRLSLWSEHLG 153
               +    +     P   G+     R+SLW+EHLG
Sbjct: 1492 AYQRHHTWAEKKKHP--HGQV-YGYRMSLWAEHLG 1523


>GSVIVT01017317001 assembled CDS
          Length = 154

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 19/80 (23%)

Query: 81  VYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEIGILIEDKEFVDSSMGG-KPWKAGKF 139
           +YVH+K+MI+DD   +IGSANIN RS+ G+RDSEI            +MGG +P+     
Sbjct: 2   IYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEI------------AMGGYQPYHLASR 49

Query: 140 SLS------LRLSLWSEHLG 153
             +       R+SLW EHLG
Sbjct: 50  QPARGQIHGFRMSLWYEHLG 69


>GSVIVT01015543001 assembled CDS
          Length = 604

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 5/73 (6%)

Query: 81  VYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEIGILIEDKEFVDSSMGGKPWKAGKFS 140
           +YVH+K+MI+DD   +IGSANIN RS+ G+RDSEI +      +    +  K    G+  
Sbjct: 452 IYVHAKMMIVDDEYIVIGSANINQRSMDGARDSEIAM----GGYQPYHLATKQPARGQIH 507

Query: 141 LSLRLSLWSEHLG 153
              R++LW EHLG
Sbjct: 508 -GFRMALWYEHLG 519


>GSVIVT01015542001 assembled CDS
          Length = 703

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 81  VYVHSKIMIIDDCATLIGSANINDRSLLGSRDSEIGILIEDKEFVDSSMGGKPWKAGKFS 140
           +YVH+K+MI+DD   + GSANIN RS+ G+RDSEI +       + S    +    G   
Sbjct: 551 IYVHAKMMIVDDEYIITGSANINQRSMDGARDSEIAMGAYQPYHLASKQPARGHIHG--- 607

Query: 141 LSLRLSLWSEHLG 153
              R++LW EHLG
Sbjct: 608 --FRMALWYEHLG 618