Jatropha Genome Database

JcCB0389891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0389891.20 - phase: 0 
         (99 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002505001 assembled CDS                                       137   7e-34

>GSVIVT01002505001 assembled CDS
          Length = 328

 Score =  137 bits (346), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 71/77 (92%), Positives = 74/77 (96%), Gaps = 1/77 (1%)

Query: 10  VLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSILSIDDMLPAVAQGAIGI 69
           VLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSILSID+MLPAVAQGAIGI
Sbjct: 164 VLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSILSIDEMLPAVAQGAIGI 223

Query: 70  ACRSNDDKMVRLYLSNL 86
           ACRSNDDKM   YL++L
Sbjct: 224 ACRSNDDKMAN-YLASL 239