Jatropha Genome Database

JcCB0389841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0389841.10 + phase: 2 /partial
         (324 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014231001 assembled CDS                                       474   e-134
GSVIVT01021185001 assembled CDS                                       426   e-120
GSVIVT01036965001 assembled CDS                                       371   e-103
GSVIVT01006474001 assembled CDS                                       368   e-102
GSVIVT01007997001 assembled CDS                                       307   6e-84
GSVIVT01011422001 assembled CDS                                       151   4e-37
GSVIVT01001303001 assembled CDS                                        53   2e-07
GSVIVT01018190001 assembled CDS                                        47   9e-06

>GSVIVT01014231001 assembled CDS
          Length = 347

 Score =  474 bits (1219), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/279 (83%), Positives = 253/279 (90%), Gaps = 1/279 (0%)

Query: 47  RRGYGSEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVSNLALYDIANTPGVAADVSHINT 106
           RR Y SE+VP+RKV +LGAAGGIGQPLALLMK+NPLVSNLALYDIA TPGVAADVSH+NT
Sbjct: 23  RRCYCSESVPERKVTILGAAGGIGQPLALLMKINPLVSNLALYDIAGTPGVAADVSHVNT 82

Query: 107 RSEVKGYVGEDQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQAISKYCP 166
            S+V G++GEDQLG+ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC AI+KYCP
Sbjct: 83  ISQVAGFMGEDQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCIAIAKYCP 142

Query: 167 NALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGXXXXXXXXXX 226
           NALVN+ISNPVNSTVPIAAEVFKKAGT+DEK+LFGVTTLDVVRAKTFYA           
Sbjct: 143 NALVNVISNPVNSTVPIAAEVFKKAGTFDEKKLFGVTTLDVVRAKTFYAAKAKVPVSEVN 202

Query: 227 XXXXGGHAGITILPLFSQATPKA-NLSSEDIEALTKRTQDGGTEVVEAKAGKGSATLSMA 285
               GGHAGITILPLFSQ TPK+ NLS EDI+ALTKRTQDGGTEVVEAKAGKGSATLSMA
Sbjct: 203 VPVVGGHAGITILPLFSQTTPKSNNLSDEDIQALTKRTQDGGTEVVEAKAGKGSATLSMA 262

Query: 286 YAGAIFADACLKGLNGVPDVVECTFVQSSVTELPFFASK 324
           YAGAIFADACLKGLNGVP+VVEC++VQSS+TELPFF+SK
Sbjct: 263 YAGAIFADACLKGLNGVPEVVECSYVQSSITELPFFSSK 301


>GSVIVT01021185001 assembled CDS
          Length = 296

 Score =  426 bits (1096), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/250 (84%), Positives = 227/250 (90%), Gaps = 2/250 (0%)

Query: 77  MKLNPLVSNLALYDIANTPGVAADVSHINTRSEVKGYVGEDQLGQALEGSDVVIIPAGVP 136
           MKLNPLVS+L+LYDIA TPGVAADVSHINTRS+V GY+G+DQLGQALEG+D+VIIPAGVP
Sbjct: 1   MKLNPLVSSLSLYDIAGTPGVAADVSHINTRSQVAGYMGDDQLGQALEGADLVIIPAGVP 60

Query: 137 RKPGMTRDDLFNINAGIVKGLCQAISKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE 196
           RKPGMTRDDLFNINAGIVK LC AI+KYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 61  RKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE 120

Query: 197 KRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAGITILPLFSQATPKA-NLSSED 255
           K+LFGVTTLDVVRAKTFYAG              GGHAGITILPLFSQATPK+ NLS ED
Sbjct: 121 KKLFGVTTLDVVRAKTFYAGKAKVPVAEANVPVVGGHAGITILPLFSQATPKSNNLSDED 180

Query: 256 IEALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECTFVQSSV 315
           I ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVEC+FVQS++
Sbjct: 181 IVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTI 240

Query: 316 T-ELPFFASK 324
             +LP+FASK
Sbjct: 241 VPDLPYFASK 250


>GSVIVT01036965001 assembled CDS
          Length = 356

 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/301 (62%), Positives = 220/301 (73%), Gaps = 2/301 (0%)

Query: 24  EMRSSLFRSVKXXXXXXXXXXXXRRGYGSEAVPDRKVAVLGAAGGIGQPLALLMKLNPLV 83
            + + L+ SV+             R  G    P  KVA+LGAAGGIGQPLA+LMK+NPLV
Sbjct: 13  RLSAHLYPSVRQMEESSVLRRANCRAKG--GAPGFKVAILGAAGGIGQPLAMLMKMNPLV 70

Query: 84  SNLALYDIANTPGVAADVSHINTRSEVKGYVGEDQLGQALEGSDVVIIPAGVPRKPGMTR 143
           S L LYD+ N PGV AD+SH++T + V+G++G+ QL  AL G D+VIIPAGVPRKPGMTR
Sbjct: 71  SVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTR 130

Query: 144 DDLFNINAGIVKGLCQAISKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVT 203
           DDLFNINAGIV+ LC+ I+K CPNA+VN+ISNPVNSTVPIAAEVFKKAGTYD KRL GVT
Sbjct: 131 DDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVT 190

Query: 204 TLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAGITILPLFSQATPKANLSSEDIEALTKRT 263
            LDVVRA TF A               GGH+G+TILPL SQ  P  + + E+ + LT R 
Sbjct: 191 MLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTPEETQYLTNRI 250

Query: 264 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECTFVQSSVTELPFFAS 323
           Q+GGTEVVEAKAG GSATLSMAYA   FADACL+GL G   VVECTFV S VTELPFFA+
Sbjct: 251 QNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECTFVASQVTELPFFAT 310

Query: 324 K 324
           K
Sbjct: 311 K 311


>GSVIVT01006474001 assembled CDS
          Length = 356

 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/269 (67%), Positives = 211/269 (78%)

Query: 56  PDRKVAVLGAAGGIGQPLALLMKLNPLVSNLALYDIANTPGVAADVSHINTRSEVKGYVG 115
           P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV +D+SH++T + V+G++G
Sbjct: 43  PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLG 102

Query: 116 EDQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQAISKYCPNALVNMISN 175
           + QL  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC+ I+K CPNA+VN+ISN
Sbjct: 103 QQQLEDALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPNAIVNLISN 162

Query: 176 PVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAG 235
           PVNSTVPIAAEVFKKAGT+D KRL GVT LDVVRA TF A               GGHAG
Sbjct: 163 PVNSTVPIAAEVFKKAGTFDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 222

Query: 236 ITILPLFSQATPKANLSSEDIEALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 295
           +TILPL SQ  P  + + E+I+ LT R Q+GGTEVVEAKAG GSATLSMAYA   FAD C
Sbjct: 223 VTILPLLSQVKPPCSFTPEEIDYLTARIQNGGTEVVEAKAGAGSATLSMAYAAVKFADTC 282

Query: 296 LKGLNGVPDVVECTFVQSSVTELPFFASK 324
           L+GL G   V++C +V S VTELPFFASK
Sbjct: 283 LRGLRGDAGVIQCAYVFSQVTELPFFASK 311


>GSVIVT01007997001 assembled CDS
          Length = 376

 Score =  307 bits (786), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 156/266 (58%), Positives = 191/266 (71%), Gaps = 22/266 (8%)

Query: 59  KVAVLGAAGGIGQPLALLMKLNPLVSNLALYDIANTPGVAADVSHINTRSEVKGYVGEDQ 118
           KVA+LGAAGGIGQPLALL+K++PLVS L LYDIAN  GVAAD+SH NT ++V  + G  +
Sbjct: 81  KVAILGAAGGIGQPLALLIKMSPLVSALHLYDIANVKGVAADLSHCNTPAQVLDFTGTSE 140

Query: 119 LGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQAISKYCPNALVNMISNPVN 178
           L  +L+G DVV+IPAGVPRKPGMTRDDLFNINA IVK L +A++  CP+A +++ISNPVN
Sbjct: 141 LANSLKGVDVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 200

Query: 179 STVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAGITI 238
           STVPIA EV ++ G YD K++FGVTTLDVVRA TF A                       
Sbjct: 201 STVPIAVEVLRRKGVYDPKKVFGVTTLDVVRANTFVAQKKN------------------- 241

Query: 239 LPLFSQATPKANLSSEDIEALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 298
           L L     P  + + E++E LT R Q+ GTEVVEAKAG GSATLSMAYA A F ++ L+ 
Sbjct: 242 LRLID---PSVSFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 298

Query: 299 LNGVPDVVECTFVQSSVTELPFFASK 324
           L+G  DV EC +VQS +TELPFFAS+
Sbjct: 299 LDGDTDVYECAYVQSELTELPFFASR 324


>GSVIVT01011422001 assembled CDS
          Length = 229

 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 84/102 (82%)

Query: 59  KVAVLGAAGGIGQPLALLMKLNPLVSNLALYDIANTPGVAADVSHINTRSEVKGYVGEDQ 118
           KVA+LGAAGGIGQPLALL+K++PLVS L LYDIAN  GV AD+SH NT S+V G+ G  +
Sbjct: 111 KVAILGAAGGIGQPLALLIKMSPLVSTLHLYDIANVKGVTADLSHCNTPSQVLGFTGAAE 170

Query: 119 LGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQA 160
           L  +L+G DVV+IPAGVPRKPGMTRDDLFNINA IVK L  A
Sbjct: 171 LPNSLKGVDVVVIPAGVPRKPGMTRDDLFNINANIVKDLWWA 212


>GSVIVT01001303001 assembled CDS
          Length = 350

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 31/257 (12%)

Query: 59  KVAVLGAAGGIGQPLALLMKLNPLVSNLALYDIA--NTPGVAADVSHINT---RSEVKGY 113
           KV+V+G  G +G  +A  +    LV  LAL D+      G   D+ H      R+++   
Sbjct: 39  KVSVIGV-GNVGMAIAQTILTQDLVDELALVDVNADKLRGEMLDLQHAAAFLPRTKIHAS 97

Query: 114 VGEDQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQAISKYCPNALVNMI 173
           V          GSD+ I+ AG  +  G +R +L   N  +   +   ++KY P++++ ++
Sbjct: 98  VDY----AITAGSDLCIVTAGARQIAGESRLNLLQRNVSLFSRIVPPLAKYSPDSILLIV 153

Query: 174 SNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGH 233
           SNPV+    +A   +K +G    + L   T LD  R +   A               G H
Sbjct: 154 SNPVDILTYVA---WKLSGFPSNRVLGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEH 210

Query: 234 -------------AGITILPLFSQATPKANLSSEDIEALTKRTQDGGTEVVEAKAGKGSA 280
                         G+ +L    +   +     E +E + K   D   EV+     KG  
Sbjct: 211 GDSSVALWSSISVGGVPVLSFLEKQ--QIAYEKETLENIHKAVIDSAYEVISL---KGYT 265

Query: 281 TLSMAYAGAIFADACLK 297
           + ++ Y+ A  A + L+
Sbjct: 266 SWAIGYSAASLARSILR 282


>GSVIVT01018190001 assembled CDS
          Length = 332

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 110 VKGYVGEDQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQAISKYC-PNA 168
           ++G V      +A +  ++ ++  G PRK GM R D+   N  I K    A+ ++  PN 
Sbjct: 66  LRGVVATTDAIEACKDVNIAVMVGGFPRKEGMERKDMMKKNVSIYKAQASALEQHAAPNC 125

Query: 169 LVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRA 210
            V +++NP N+   I  E    A +  EK +  +T LD  RA
Sbjct: 126 KVLVVANPANTNALILKEF---APSIPEKNVTCLTRLDHNRA 164