Jatropha Genome Database

JcCB0387971.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0387971.20 + phase: 0 /partial
         (118 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011026001 assembled CDS                                       222   2e-59
GSVIVT01037591001 assembled CDS                                       155   3e-39
GSVIVT01034615001 assembled CDS                                       145   3e-36

>GSVIVT01011026001 assembled CDS
          Length = 888

 Score =  222 bits (566), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/117 (88%), Positives = 113/117 (96%)

Query: 2   LGDAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVSGGALKGGRAVESEAAVA 61
           L DAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHV+GGAL+GGRA+E EAAVA
Sbjct: 233 LADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVA 292

Query: 62  VLDTAAGVWLDKNGLVTSSKTSKGHTEHDPSLELMRRCRHASASVGVRIYVYGGLRG 118
           VLDTAAGVWLD+NGLVTS + +KGHTE+DPSLELMRRCRHA+ASVGVRIY+YGGL+G
Sbjct: 293 VLDTAAGVWLDRNGLVTSPRINKGHTEYDPSLELMRRCRHAAASVGVRIYIYGGLKG 349


>GSVIVT01037591001 assembled CDS
          Length = 1049

 Score =  155 bits (392), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 92/120 (76%), Gaps = 3/120 (2%)

Query: 2   LGDAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVSGGALKGGRAVESEAAVA 61
           L  AYGL  HR+G+WEW +APGVSPSPRYQHAAVFV ARLHVSGGAL GGR VE  ++VA
Sbjct: 349 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVA 408

Query: 62  VLDTAAGVWLDKNGLVTSSKTSK---GHTEHDPSLELMRRCRHASASVGVRIYVYGGLRG 118
           VLDTAAGVW D   +VTS +T K        D ++EL RRCRHA+A+VG  I++YGGLRG
Sbjct: 409 VLDTAAGVWCDTKSVVTSPRTGKYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG 468


>GSVIVT01034615001 assembled CDS
          Length = 928

 Score =  145 bits (367), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 88/119 (73%), Gaps = 3/119 (2%)

Query: 2   LGDAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVSGGALKGGRAVESEAAVA 61
           L  AYGL   R+G W W +A GVSPSPRYQHAAVFV A+LHVSGGAL GGR VE  +++A
Sbjct: 276 LASAYGLARDRDGHWAWAIALGVSPSPRYQHAAVFVHAQLHVSGGALGGGRMVEDRSSIA 335

Query: 62  VLDTAAGVWLDKNGLVTSSKT---SKGHTEHDPSLELMRRCRHASASVGVRIYVYGGLR 117
           VLDTAAGVW D   +VTS++    S   T  D S EL+RRCRHA+A+VG  +YVYGGLR
Sbjct: 336 VLDTAAGVWCDTKAIVTSARAGRYSANATGGDTSFELIRRCRHAAAAVGDLVYVYGGLR 394