Jatropha Genome Database

JcCB0386201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0386201.10 - phase: 0 
         (218 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026184001 assembled CDS                                       155   9e-39

>GSVIVT01026184001 assembled CDS
          Length = 308

 Score =  155 bits (393), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 94/159 (59%), Gaps = 2/159 (1%)

Query: 53  PPRQSSRRTPFTNLSQVDADLALARTLQEQERAYMMLRFGNEGSDYGSWEAGSYFPXXXX 112
           PPRQSSR TPFTNLSQVDADLALARTLQEQERAYMMLR   EGSDYGSWEAGSYF     
Sbjct: 48  PPRQSSR-TPFTNLSQVDADLALARTLQEQERAYMMLRINGEGSDYGSWEAGSYF-NEEE 105

Query: 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXSMDAFDVHAHTDADVDNNPAVDLDPAMFSSDEA 172
                                        DAFDVHA  D   D+NP ++ DPA+FSSDEA
Sbjct: 106 FDDPNDGTDVDDGVDDEDEDEGEYDGTDEDAFDVHAQADDGEDDNPTIEFDPAVFSSDEA 165

Query: 173 YARALQDXXXXXXXXXXXXXXGINEREVEDVEDLGANSQ 211
           YARALQ               GI++  VED ED G NSQ
Sbjct: 166 YARALQHIEEQEMAARLLALAGIHDHGVEDTEDHGGNSQ 204