Jatropha Genome Database

JcCB0384321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0384321.10 - phase: 2 /partial
         (176 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015776001 assembled CDS                                       222   7e-59
GSVIVT01003418001 assembled CDS                                       219   7e-58
GSVIVT01009072001 assembled CDS                                       217   2e-57

>GSVIVT01015776001 assembled CDS
          Length = 249

 Score =  222 bits (566), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/127 (85%), Positives = 109/127 (85%)

Query: 1   FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIV 60
           FKGYVFKIMGGCDKQGFPMKQGVLTPGRV LLLHRGTPCF                 CIV
Sbjct: 45  FKGYVFKIMGGCDKQGFPMKQGVLTPGRVSLLLHRGTPCFRGYGRRNGERRRKAVRGCIV 104

Query: 61  SQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 120
           SQDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR
Sbjct: 105 SQDLSVLNLVIVKKGESDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 164

Query: 121 TFTTKSG 127
           TFTTKSG
Sbjct: 165 TFTTKSG 171


>GSVIVT01003418001 assembled CDS
          Length = 249

 Score =  219 bits (557), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 106/128 (82%), Positives = 108/128 (84%)

Query: 1   FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIV 60
           FKGYVFKIMGGCDKQGFPMKQGVLTPGRV+LLLHRGTPCF                 CIV
Sbjct: 45  FKGYVFKIMGGCDKQGFPMKQGVLTPGRVQLLLHRGTPCFRGYGRRNGERRRKAVRGCIV 104

Query: 61  SQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 120
           SQDLSVLNLVIVKKGE +LPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR
Sbjct: 105 SQDLSVLNLVIVKKGEGELPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 164

Query: 121 TFTTKSGN 128
           TFTTKSG 
Sbjct: 165 TFTTKSGK 172


>GSVIVT01009072001 assembled CDS
          Length = 249

 Score =  217 bits (553), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/127 (82%), Positives = 108/127 (85%)

Query: 1   FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIV 60
           F GYVFKIMGGCDKQGFPMKQGVLTPGRV LLLHRGTPCF                 CIV
Sbjct: 45  FNGYVFKIMGGCDKQGFPMKQGVLTPGRVSLLLHRGTPCFRGYGRRNGERRRKAVRGCIV 104

Query: 61  SQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 120
           SQDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR
Sbjct: 105 SQDLSVLNLVIVKKGESDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRR 164

Query: 121 TFTTKSG 127
           +FTTKSG
Sbjct: 165 SFTTKSG 171