Jatropha Genome Database

JcCB0384191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0384191.10 + phase: 0 /partial
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036983001 assembled CDS                                       326   4e-90
GSVIVT01036981001 assembled CDS                                       323   3e-89
GSVIVT01008968001 assembled CDS                                       267   3e-72
GSVIVT01029761001 assembled CDS                                       263   4e-71
GSVIVT01020594001 assembled CDS                                        51   3e-07
GSVIVT01020585001 assembled CDS                                        51   4e-07
GSVIVT01014286001 assembled CDS                                        49   1e-06
GSVIVT01016669001 assembled CDS                                        48   3e-06

>GSVIVT01036983001 assembled CDS
          Length = 397

 Score =  326 bits (835), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 154/180 (85%), Positives = 167/180 (92%)

Query: 1   RSEALSTLEGYSGYGAEQGEKPLRAAIASTFYGDLGIQEDDIFVSDGAKCDISRLQILFG 60
           ++ ALSTLEGYSGYGAEQGE  LRAAIAST+YGDL I+E DIFVSDGAK DISRLQ++FG
Sbjct: 52  KANALSTLEGYSGYGAEQGENRLRAAIASTYYGDLSIEESDIFVSDGAKSDISRLQVMFG 111

Query: 61  SNVTMAVQDPSYPAYVDSSVIMGQTGLYQKDAEKYANIEYMRCSPENGFFPDLSKVSRTD 120
           SNVTMAVQDPSYPAYVDSSVI+GQTG +QKD EKY NIEYM+C+PENGFFPDLS VSRTD
Sbjct: 112 SNVTMAVQDPSYPAYVDSSVILGQTGQFQKDVEKYGNIEYMKCNPENGFFPDLSTVSRTD 171

Query: 121 IIFFCSPNNPTGSVATREQLVQLVQFAKDNGSIIVYDSAYAMYISDDKPRSIFEIPGAKE 180
           IIFFCSPNNPTG+ ATREQL +LVQFAKDNGSI+VYDSAYAMYISDD PRSIFEIPGAKE
Sbjct: 172 IIFFCSPNNPTGNAATREQLTRLVQFAKDNGSILVYDSAYAMYISDDSPRSIFEIPGAKE 231


>GSVIVT01036981001 assembled CDS
          Length = 469

 Score =  323 bits (828), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 153/180 (85%), Positives = 165/180 (91%)

Query: 1   RSEALSTLEGYSGYGAEQGEKPLRAAIASTFYGDLGIQEDDIFVSDGAKCDISRLQILFG 60
           ++ ALSTLEGYSGYGAEQGEK LRAAIASTFYGDL I+E DIFVSDGAK DISRLQ++FG
Sbjct: 124 KAHALSTLEGYSGYGAEQGEKQLRAAIASTFYGDLSIEESDIFVSDGAKSDISRLQVMFG 183

Query: 61  SNVTMAVQDPSYPAYVDSSVIMGQTGLYQKDAEKYANIEYMRCSPENGFFPDLSKVSRTD 120
           SNVTMAVQDPSYPAYVD SVI+GQTG +QKD EKY NIEYM+C+PENGFFPDLS VSRTD
Sbjct: 184 SNVTMAVQDPSYPAYVDLSVILGQTGQFQKDVEKYGNIEYMKCNPENGFFPDLSTVSRTD 243

Query: 121 IIFFCSPNNPTGSVATREQLVQLVQFAKDNGSIIVYDSAYAMYISDDKPRSIFEIPGAKE 180
           IIFFCSP NPTG+ ATREQL +LVQFAKDNGSI+VYDS YAMYISDD PRSIFEIPGAKE
Sbjct: 244 IIFFCSPYNPTGNAATREQLTRLVQFAKDNGSILVYDSGYAMYISDDSPRSIFEIPGAKE 303


>GSVIVT01008968001 assembled CDS
          Length = 463

 Score =  267 bits (682), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 149/180 (82%)

Query: 1   RSEALSTLEGYSGYGAEQGEKPLRAAIASTFYGDLGIQEDDIFVSDGAKCDISRLQILFG 60
            + ALST+ GY GYGAEQG   LR AIA TFY D+GI+ +++FVSDGA+CDISR+Q+L G
Sbjct: 118 HAHALSTIRGYRGYGAEQGNMELRNAIAQTFYRDMGIKANEVFVSDGAQCDISRIQMLLG 177

Query: 61  SNVTMAVQDPSYPAYVDSSVIMGQTGLYQKDAEKYANIEYMRCSPENGFFPDLSKVSRTD 120
           SNVT+AVQDPS+PAY+DSSVI+GQ+G ++++  KY NI YM C PE+ FFPDLS   RTD
Sbjct: 178 SNVTVAVQDPSFPAYMDSSVIIGQSGNFKEETGKYENILYMNCGPESNFFPDLSNTPRTD 237

Query: 121 IIFFCSPNNPTGSVATREQLVQLVQFAKDNGSIIVYDSAYAMYISDDKPRSIFEIPGAKE 180
           IIF CSPNNPTG  A+R+QL QLV+FAK NGSII++DSAYA YI+D+ PRSIFEIPG +E
Sbjct: 238 IIFLCSPNNPTGHAASRQQLEQLVEFAKANGSIIIHDSAYAAYITDESPRSIFEIPGGRE 297


>GSVIVT01029761001 assembled CDS
          Length = 440

 Score =  263 bits (671), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 119/180 (66%), Positives = 149/180 (82%)

Query: 1   RSEALSTLEGYSGYGAEQGEKPLRAAIASTFYGDLGIQEDDIFVSDGAKCDISRLQILFG 60
            +  LST+EGY GYGAEQG K LR AIA T YGDL I++ +IFVSDG++CDISRLQ+L G
Sbjct: 95  HARRLSTVEGYRGYGAEQGNKALRKAIAETLYGDLPIKDTEIFVSDGSQCDISRLQLLLG 154

Query: 61  SNVTMAVQDPSYPAYVDSSVIMGQTGLYQKDAEKYANIEYMRCSPENGFFPDLSKVSRTD 120
           SNVT+AVQDP++PAY+DSSVI+GQTG +Q +  KY NI+YM C P+N FFPDL+  + TD
Sbjct: 155 SNVTIAVQDPTFPAYIDSSVIIGQTGDFQDETGKYQNIKYMPCRPQNNFFPDLTTTATTD 214

Query: 121 IIFFCSPNNPTGSVATREQLVQLVQFAKDNGSIIVYDSAYAMYISDDKPRSIFEIPGAKE 180
           +IF CSPNNPTG  A+R+QL QLV+FA+ N SII++DSAYA Y++D+ PRSIFEIPGA+E
Sbjct: 215 VIFICSPNNPTGHAASRKQLEQLVEFARANRSIIIFDSAYAAYVTDESPRSIFEIPGARE 274


>GSVIVT01020594001 assembled CDS
          Length = 419

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 20/167 (11%)

Query: 11  YSGYGAEQGEKPLRAAIASTFYGDLGIQ--EDDIFVSDGAKCDIS-RLQILFGSNVTMAV 67
           ++ Y    G  P R A+A     DL  Q   DDI+++ G    I   +Q+L      + +
Sbjct: 77  FNSYAPTVGLLPARRAVAEYLSRDLPYQLSPDDIYLTIGCTQAIEIMIQVLARPGANILL 136

Query: 68  QDPSYPAYVDSSVIMGQTGLYQKDAEKYANIEYMRCSPENGFFPDLSKVS-----RTDII 122
             P +P Y              + A     + +    PE G+  DL  V       T  +
Sbjct: 137 PRPGFPYY------------EARAAADNLEVRHFDLLPEQGWEVDLEAVKALADENTVAM 184

Query: 123 FFCSPNNPTGSVATREQLVQLVQFAKDNGSIIVYDSAYAMYISDDKP 169
              +P NP+GSV T E L ++ + A++ G +++ D  Y       KP
Sbjct: 185 VIVNPGNPSGSVFTYEHLKKVAETARNLGIMVISDEVYGHLAFGSKP 231


>GSVIVT01020585001 assembled CDS
          Length = 360

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 11  YSGYGAEQGEKPLRAAIASTFYGDL--GIQEDDIFVSDGAKCDISRL-QILFGSNVTMAV 67
           ++ Y    G  P R AIA     DL   +  DDIF++ G    I  + ++L      + +
Sbjct: 77  FNSYAPAVGILPARRAIAEHLSHDLPYKLSPDDIFLTIGCSQAIELIIKVLARPGANILL 136

Query: 68  QDPSYPAYVDSSVIMGQTGLYQKDAEKYANIEYMRCSPENGFFPDLSKVS-----RTDII 122
             P YP Y   +            A  +    +    PE G+  DL  V       T  +
Sbjct: 137 PRPGYPFYESHA------------AANHLEFRHFDLLPEKGWEVDLEGVKALADENTVAM 184

Query: 123 FFCSPNNPTGSVATREQLVQLVQFAKDNGSIIVYDSAYA 161
              +P NP G++ T E L ++ + A+  G +++ D  YA
Sbjct: 185 VIINPGNPCGNIFTHEHLKKVAETARMLGILVISDEVYA 223


>GSVIVT01014286001 assembled CDS
          Length = 450

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 20/158 (12%)

Query: 11  YSGYGAEQGEKPLRAAIASTFYGDL--GIQEDDIFVSDGAKCDIS-RLQILFGSNVTMAV 67
           Y+GY    G    R AIA     DL   +  DD+F++ G    I   L IL      + +
Sbjct: 105 YNGYAPTSGLPQARKAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSILARPGANILI 164

Query: 68  QDPSYPAYVDSSVIMGQTGLYQKDAEKYANIEYMRCSPENGFFPDLSKVS-----RTDII 122
            +P +P Y  S+   G              + Y    PE G+  DL  +       T  +
Sbjct: 165 PNPGFPIYQLSASFRG------------LEVRYYDLLPEKGWEADLDAIKALADQNTVAL 212

Query: 123 FFCSPNNPTGSVATREQLVQLVQFAKDNGSIIVYDSAY 160
              +PNNP GSV + + L +  + A+     ++ D  Y
Sbjct: 213 VIINPNNPCGSVYSYQHLKKTAETARKLSIPVIADEVY 250


>GSVIVT01016669001 assembled CDS
          Length = 482

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 13/171 (7%)

Query: 14  YGAEQGEKPLRAAIASTFYGDLGI--QEDDIFVSDGAKCDISRL-QILFGSNVT-MAVQD 69
           Y   QG K LR  IA+      G     +DIF++DGA   +  + Q+L  +    +    
Sbjct: 112 YSHSQGIKGLRDTIAAGIEARDGFPSNPNDIFLTDGASPAVHMMMQLLIRTEKDGILCPI 171

Query: 70  PSYPAYVDSSVIMGQTGL--YQKDAEKYA-NIEYMRCSPENGFFPDLSKVSRTDIIFFCS 126
           P YP Y  S V+ G T +  Y  +A  +   I  ++   E+      SK      +   +
Sbjct: 172 PQYPLYSASIVLHGGTLVPYYLDEATGWGLEISELQKQLEDA----KSKGITVRALVVIN 227

Query: 127 PNNPTGSVATREQLVQLVQFAKDNGSIIVYDSAYA--MYISDDKPRSIFEI 175
           P NPTG V + +    +V+F K  G +++ D  Y   +Y+ D K  S  +I
Sbjct: 228 PGNPTGQVLSEDNQRDIVEFCKKEGLVLLADEVYQENVYVPDKKFHSFKKI 278