Jatropha Genome Database

JcCB0383651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0383651.10 + phase: 0 /partial
         (68 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021430001 assembled CDS                                       104   1e-23
GSVIVT01021433001 assembled CDS                                       103   2e-23
GSVIVT01000485001 assembled CDS                                       103   2e-23

>GSVIVT01021430001 assembled CDS
          Length = 178

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 54/59 (91%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          +FHQYQVVGR LP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKV+++  + L +
Sbjct: 5  RFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63


>GSVIVT01021433001 assembled CDS
          Length = 124

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 53/59 (89%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          +FHQYQVVGR LP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKV+++  + L +
Sbjct: 5  RFHQYQVVGRALPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63


>GSVIVT01000485001 assembled CDS
          Length = 178

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 54/59 (91%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          +FHQYQVVGR LP+E+DEHP+IYRMKLWATNEVRAKSKFWYFLRKLKKV+++  + L +
Sbjct: 5  KFHQYQVVGRALPSESDEHPRIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63