Jatropha Genome Database

JcCB0381561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0381561.10 - phase: 0 /partial
         (163 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010734001 assembled CDS                                       245   5e-66

>GSVIVT01010734001 assembled CDS
          Length = 381

 Score =  245 bits (626), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 109/130 (83%), Positives = 121/130 (93%)

Query: 34  TQAERTIKEGPRNDWTRHEIKDVYDSPLLDLLFHGAQVHRHAQNFREVQQCTLLSIKTGG 93
            +AER I++GPRNDWTR EIK +YDSPLLDLLFHGAQVHRHA NFREVQQCTLLS+KTGG
Sbjct: 34  VEAERAIRDGPRNDWTRPEIKSIYDSPLLDLLFHGAQVHRHAHNFREVQQCTLLSVKTGG 93

Query: 94  CSEDCSYCPQSSRYKTGLKAQKLMTKDDVMEAAKRAKEAGSTRFCMGAAWRDTVGRNTNF 153
           CSEDCSYCPQSSRY TG+KAQ+LM KD V++AA++AKEAGSTRFCMGAAWRDTVGR TNF
Sbjct: 94  CSEDCSYCPQSSRYSTGVKAQRLMNKDAVLQAAQKAKEAGSTRFCMGAAWRDTVGRKTNF 153

Query: 154 NQILDYVKEI 163
           NQIL+YVKEI
Sbjct: 154 NQILEYVKEI 163