Jatropha Genome Database
- JcCB0379541.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0379541.10 - phase: 1 /partial
(115 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01030482001 assembled CDS 106 2e-24
GSVIVT01012662001 assembled CDS 81 1e-16
GSVIVT01012665001 assembled CDS 63 3e-11
GSVIVT01025676001 assembled CDS 51 1e-07
GSVIVT01017345001 assembled CDS 49 4e-07
GSVIVT01013621001 assembled CDS 48 9e-07
GSVIVT01014221001 assembled CDS 48 1e-06
GSVIVT01016975001 assembled CDS 48 1e-06
GSVIVT01009979001 assembled CDS 48 1e-06
GSVIVT01020456001 assembled CDS 47 1e-06
GSVIVT01014500001 assembled CDS 47 2e-06
GSVIVT01005266001 assembled CDS 47 2e-06
GSVIVT01037982001 assembled CDS 47 2e-06
GSVIVT01032435001 assembled CDS 47 2e-06
GSVIVT01004091001 assembled CDS 47 3e-06
GSVIVT01006444001 assembled CDS 46 3e-06
GSVIVT01037993001 assembled CDS 46 3e-06
GSVIVT01029106001 assembled CDS 46 4e-06
GSVIVT01018458001 assembled CDS 45 5e-06
GSVIVT01030992001 assembled CDS 45 7e-06
GSVIVT01018462001 assembled CDS 45 8e-06
GSVIVT01036465001 assembled CDS 45 9e-06
>GSVIVT01030482001 assembled CDS
Length = 625
Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
Query: 22 CIYVRFYTRKKAKEAILLKKTSPDLST-NAPRSNSDGLVESTGLA--PSSGSTIITLKKP 78
CIY+ FY ++K KEA LL L + P SD VESTG A S+G T IT+ K
Sbjct: 253 CIYIGFYRKRKVKEAALLPTEEHSLQPGHGPGIASDKAVESTGPAFGSSAGLTGITVDKS 312
Query: 79 VEFSYKELAQATDNFNVANKIGKGGFGSVYYAELRGE 115
VEFSY+ELA+A+DNFN+ANKIG+GGFGSVYYAELRGE
Sbjct: 313 VEFSYEELAKASDNFNLANKIGQGGFGSVYYAELRGE 349
>GSVIVT01012662001 assembled CDS
Length = 650
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 23 IYVRFYTRKKAKEAILLKKTSPDL---STNAPRSNSDGLVESTGL--APSSGSTIITLKK 77
++ R RKK K+ + S A S S+ +S L A S G IT+ K
Sbjct: 276 LFARICKRKKVKKVLFFPAASEQQYMQHRQAHGSASEETSDSAALVGAASLGLVGITVDK 335
Query: 78 PVEFSYKELAQATDNFNVANKIGKGGFGSVYYAELRGE 115
VEFSY+ELA ATDNF++ANKIG+GGFGSVYYAELRGE
Sbjct: 336 SVEFSYEELATATDNFSLANKIGQGGFGSVYYAELRGE 373
>GSVIVT01012665001 assembled CDS
Length = 365
Score = 62.8 bits (151), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 37/43 (86%)
Query: 73 ITLKKPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAELRGE 115
IT K VEF+Y+ELA+AT+NF+ A+KIG+GGF VYYAEL+G+
Sbjct: 46 ITADKSVEFTYEELAKATNNFSAASKIGQGGFALVYYAELQGQ 88
>GSVIVT01025676001 assembled CDS
Length = 433
Score = 50.8 bits (120), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 81 FSYKELAQATDNFNVANKIGKGGFGSVYYAELR 113
FSYKEL ATD+F+ +NKIG+GGFGSVY +LR
Sbjct: 74 FSYKELKIATDSFHPSNKIGEGGFGSVYKGQLR 106
>GSVIVT01017345001 assembled CDS
Length = 172
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 81 FSYKELAQATDNFNVANKIGKGGFGSVYYAEL 112
FS KEL AT+NFN NK+G+GGFGSVY+ +L
Sbjct: 28 FSLKELHAATNNFNYDNKLGEGGFGSVYWGQL 59
>GSVIVT01013621001 assembled CDS
Length = 911
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 77 KPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAEL 112
+P FSY EL AT+NFN NK+G+GGFG+VY L
Sbjct: 567 RPSTFSYAELRTATENFNAINKLGEGGFGAVYKGTL 602
>GSVIVT01014221001 assembled CDS
Length = 385
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 81 FSYKELAQATDNFNVANKIGKGGFGSVYYAELR 113
+SY+EL AT +F++ANKIG+GGFGSVY LR
Sbjct: 35 YSYRELRIATQDFSLANKIGEGGFGSVYKGTLR 67
>GSVIVT01016975001 assembled CDS
Length = 508
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 47 STNAPRSNSDGLVESTGLAPSSGSTIITLKKPVEFSYKELAQATDNFNVANKIGKGGFGS 106
S + ++N + + + G+ + ++KPV F+Y+E+ +TD F+ +N +G G +GS
Sbjct: 152 SADVKQTNGESSNLQMNIPKAIGTDVFDMEKPVVFTYEEILSSTDGFSDSNLLGHGTYGS 211
Query: 107 VYYAELRGE 115
VYY L +
Sbjct: 212 VYYGVLHDQ 220
>GSVIVT01009979001 assembled CDS
Length = 595
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 71 TIITLKKPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAELR 113
TI+ +K+ ++FS+ EL ATD+F+ N +G+GG+G VY EL+
Sbjct: 283 TILYIKESMKFSFSELQLATDDFSKENLLGEGGYGHVYKGELK 325
>GSVIVT01020456001 assembled CDS
Length = 385
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 81 FSYKELAQATDNFNVANKIGKGGFGSVYYAELR 113
+ YKEL ATD+F+ ANKIG+GGFGSVY L+
Sbjct: 34 YMYKELKNATDDFSPANKIGEGGFGSVYKGRLK 66
>GSVIVT01014500001 assembled CDS
Length = 1901
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 49 NAPRSNSDGLVESTGLAPSSGSTIITLKKPVE---FSYKELAQATDNFNVANKIGKGGFG 105
N+ + N+ + + G P T + K+ +E F + +A+ATDNF+ +NK+G+GGFG
Sbjct: 1536 NSSQINTFCSLITMGHNPERDHTNESEKEDLELPLFDFDTIAEATDNFSRSNKLGQGGFG 1595
Query: 106 SVYYAELRG 114
VY LRG
Sbjct: 1596 PVYKGMLRG 1604
>GSVIVT01005266001 assembled CDS
Length = 645
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 75 LKKPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAELR 113
L+ PV +SY++L AT NF+ NK+G+GGFG VY L+
Sbjct: 308 LRGPVNYSYRDLKAATKNFSEENKLGEGGFGDVYKGTLK 346
>GSVIVT01037982001 assembled CDS
Length = 1037
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 77 KPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAEL 112
+P FSY EL AT++FN ANK+G+GGFG VY L
Sbjct: 683 RPNTFSYSELRTATEDFNPANKLGEGGFGPVYKGTL 718
>GSVIVT01032435001 assembled CDS
Length = 1245
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 74 TLKKPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAELR 113
+K+ ++F Y L +ATD FN ANK+G+GGFG V+ LR
Sbjct: 337 VVKRSLQFKYTTLEKATDYFNEANKLGQGGFGEVFKGTLR 376
>GSVIVT01004091001 assembled CDS
Length = 545
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 60 ESTGLAPSSGSTIITLKKPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAEL 112
E GL+ ++PV FS +E+ AT+NF+ KIG+GG+GSVY+ L
Sbjct: 213 EKNGLSKDKEGECFESERPVIFSLEEIEDATNNFDETRKIGEGGYGSVYFGVL 265
>GSVIVT01006444001 assembled CDS
Length = 441
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 75 LKKPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAELR 113
L+K + S+ EL +ATDNF+ ++KIG+GGFG+VY L+
Sbjct: 106 LEKTKQISFNELKKATDNFHPSSKIGRGGFGTVYKGTLK 144
>GSVIVT01037993001 assembled CDS
Length = 2282
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 77 KPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAELRGE 115
+P F+Y EL AT++FN NK+G+GGFG VY +L E
Sbjct: 685 RPNTFTYAELRTATEDFNPTNKLGEGGFGPVYKGKLNDE 723
Score = 45.1 bits (105), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 77 KPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAEL 112
+P F Y EL AT+NF+ NK+G+GGFGSVY L
Sbjct: 1948 RPNTFRYAELRTATENFSATNKLGEGGFGSVYKGTL 1983
>GSVIVT01029106001 assembled CDS
Length = 884
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 69 GSTIITLKKPVE-FSYKELAQATDNFNVANKIGKGGFGSVYYAE 111
G T++ + P FSYKEL AT+ F+ NK+G+GGFGSVY+ +
Sbjct: 16 GVTLVGVNSPWRIFSYKELYTATNGFSEENKLGEGGFGSVYWGK 59
>GSVIVT01018458001 assembled CDS
Length = 343
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 81 FSYKELAQATDNFNVANKIGKGGFGSVY 108
+S KEL QATDNF+ KIG+GGFGSVY
Sbjct: 30 YSLKELLQATDNFHETKKIGEGGFGSVY 57
>GSVIVT01030992001 assembled CDS
Length = 371
Score = 45.1 bits (105), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 81 FSYKELAQATDNFNVANKIGKGGFGSVYYAELR 113
FSY EL +AT+NF+ + ++G GGFG+VYY +L+
Sbjct: 266 FSYMELEEATNNFDPSRELGDGGFGTVYYGKLQ 298
>GSVIVT01018462001 assembled CDS
Length = 413
Score = 44.7 bits (104), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 76 KKPVEFSYKELAQATDNFNVANKIGKGGFGSVYYAELR 113
K P +SY L AT +F+ AN++G+GGFGSVY L+
Sbjct: 73 KPPYRYSYSVLRHATSSFSAANRLGQGGFGSVYRGTLK 110
>GSVIVT01036465001 assembled CDS
Length = 436
Score = 44.7 bits (104), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 30 RKKAKEAILLKKTSPDLSTNAPRSNSDGLV----ESTGLAPSSGSTIITLKKPVE----- 80
RKK + + + T P S A NSD + S+ L SGS + P +
Sbjct: 26 RKKKRAGLNIGYTMP--SPFASSQNSDSVFLRPHSSSALPLGSGSGSDFVYSPPDPVGSN 83
Query: 81 ----FSYKELAQATDNFNVANKIGKGGFGSVY 108
FSY+EL +ATD F+ N +G+GGFG VY
Sbjct: 84 SRPWFSYEELVEATDGFSSQNLLGEGGFGCVY 115