Jatropha Genome Database

JcCB0376261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0376261.10 + phase: 1 /partial
         (203 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003685001 assembled CDS                                       177   4e-45
GSVIVT01021810001 assembled CDS                                        90   8e-19

>GSVIVT01003685001 assembled CDS
          Length = 229

 Score =  177 bits (448), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 94/116 (81%)

Query: 49  AKMQGKSRSELPPYDVERFIFMVQGXXXXXXXXXXXHELMVDSYAYLPPNFKHSLECDAF 108
           + ++G SRS LPPYDVERF+F+VQG           HELMVDSYAYLPPN +HS+ CDA 
Sbjct: 38  SHLEGNSRSGLPPYDVERFVFVVQGTVTLANVSDVNHELMVDSYAYLPPNSEHSISCDAS 97

Query: 109 ATLVVFERRYASLDDLITEQIVGSTDKQPLLETPGEVFELRKLLPQTLPYDFNIHV 164
           ATLVVFERRYASL + ITEQIVGST KQPLLETPGEVFELRKLLP + PYDFNIH+
Sbjct: 98  ATLVVFERRYASLKNHITEQIVGSTVKQPLLETPGEVFELRKLLPTSAPYDFNIHI 153


>GSVIVT01021810001 assembled CDS
          Length = 199

 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 51/67 (76%), Gaps = 2/67 (2%)

Query: 4   FTRSVYKSDHALITPESHVFSPLP--TNTLGAYLITPAMGSHFVMYLAKMQGKSRSELPP 61
           +++ V K   ALI  ESHVFS LP  TNT GAYLITPAMGSHFVMYLA MQG SRS LP 
Sbjct: 110 YSQCVLKKYLALIMLESHVFSSLPEWTNTPGAYLITPAMGSHFVMYLANMQGNSRSRLPS 169

Query: 62  YDVERFI 68
           YDV+R +
Sbjct: 170 YDVKRLL 176