Jatropha Genome Database

JcCB0376161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0376161.10 + phase: 1 /pseudo/partial
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021749001 assembled CDS                                       320   2e-88
GSVIVT01015720001 assembled CDS                                       314   1e-86
GSVIVT01019545001 assembled CDS                                       117   2e-27
GSVIVT01019547001 assembled CDS                                       111   2e-25
GSVIVT01019833001 assembled CDS                                       107   3e-24

>GSVIVT01021749001 assembled CDS
          Length = 418

 Score =  320 bits (820), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 163/176 (92%), Gaps = 1/176 (0%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 65
           MI RYFNVIGSDP+GRLGEAPRPELREHGRISGACFDAA G+I GLKVKGTDYKT DGTC
Sbjct: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAASGVIPGLKVKGTDYKTPDGTC 302

Query: 66  IRDYIDVTDLVDAHVKALERALPRKVGIYNVGTGKGRSVNEFVEACKKATGVNIKVDYLP 125
           +RDYIDVTDLVDAHVKAL +A P KVGIYNVGTGKGRSV EFVEACKKATGVNIKV+YL 
Sbjct: 303 VRDYIDVTDLVDAHVKALNKAAPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLA 362

Query: 126 RRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYG-SPLVMAS 180
           RRPGDYAEVFSDP+KI  ELNWTA++TDLQESL++AWRWQK+HRNGYG +PL MAS
Sbjct: 363 RRPGDYAEVFSDPSKIDHELNWTAKYTDLQESLRVAWRWQKAHRNGYGTTPLAMAS 418


>GSVIVT01015720001 assembled CDS
          Length = 417

 Score =  314 bits (805), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 147/175 (84%), Positives = 160/175 (91%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 65
           M+ RYFNVIGSDP+GRLGEAPRPELREHGRISGACFDAA GII GLKVKGTDYKT DGTC
Sbjct: 243 MVLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYKTADGTC 302

Query: 66  IRDYIDVTDLVDAHVKALERALPRKVGIYNVGTGKGRSVNEFVEACKKATGVNIKVDYLP 125
           +RDYIDVTDLVDAHVKAL  A P+KVGIYNVGTGKGRSV EFVEACKKATGV+IKV+YL 
Sbjct: 303 VRDYIDVTDLVDAHVKALAHAKPKKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVEYLD 362

Query: 126 RRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGSPLVMAS 180
           RRPGDYAEV+SDP+KI  ELNWTAQ+T+LQESLQ AWRWQKSHRNGYG+ + + S
Sbjct: 363 RRPGDYAEVYSDPSKILRELNWTAQYTNLQESLQTAWRWQKSHRNGYGTRMSLHS 417


>GSVIVT01019545001 assembled CDS
          Length = 348

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 95/173 (54%), Gaps = 10/173 (5%)

Query: 6   MISRYFNVIGSDPDGRLGEAPR--PELREHGRISGACFDAARGIISGLKVKGTDYKTHDG 63
           ++ RYFN +G+ P G +GE PR  P       +       A G    L V G+DY T DG
Sbjct: 177 VLLRYFNPVGAHPSGYIGEDPRGIPN-----NLMPFVQQVAVGRRPALTVFGSDYSTKDG 231

Query: 64  TCIRDYIDVTDLVDAHVKALERALPRKVG--IYNVGTGKGRSVNEFVEACKKATGVNIKV 121
           T +RDYI V DL D H+ AL + L  ++G  +YN+GTGKG SV E V A +KA+G  I +
Sbjct: 232 TGVRDYIHVVDLADGHIAALHKLLNSEIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL 291

Query: 122 DYLPRRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGS 174
               RRPGD   V++  TK   ELNW A++  + E  +  W W   +  GY S
Sbjct: 292 VMDGRRPGDAEIVYASTTKAEKELNWKAKY-GISEMCRDQWNWASKNPYGYES 343


>GSVIVT01019547001 assembled CDS
          Length = 348

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 92/173 (53%), Gaps = 10/173 (5%)

Query: 6   MISRYFNVIGSDPDGRLGEAPR--PELREHGRISGACFDAARGIISGLKVKGTDYKTHDG 63
           ++ RYFN +G+   G +GE PR  P       +       A G    L V G+DY T DG
Sbjct: 177 VLLRYFNPVGAHSSGHIGEDPRGIPN-----NLMPFVQQVAVGRRPALTVFGSDYSTKDG 231

Query: 64  TCIRDYIDVTDLVDAHVKALERALPRKVG--IYNVGTGKGRSVNEFVEACKKATGVNIKV 121
           T +RDYI V DL D H+ AL +    ++G  +YN+GTGKG SV E V A +KA+G  I +
Sbjct: 232 TGVRDYIHVVDLADGHIAALCKLFNSEIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL 291

Query: 122 DYLPRRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGS 174
               RRPGD   V++   K   ELNW A++  + E  +  W W   +  GY S
Sbjct: 292 VMAGRRPGDAEIVYASTAKAEKELNWKAKY-GISEMCRDQWNWASKNPYGYES 343


>GSVIVT01019833001 assembled CDS
          Length = 350

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 93/179 (51%), Gaps = 21/179 (11%)

Query: 6   MISRYFNVIGSDPDGRLGEAPR-------PELREHGRISGACFDAARGIISGLKVKGTDY 58
           ++ RYFN +G+   G+LGE P+       P +++           A G +  L V G DY
Sbjct: 181 ILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQ----------VAVGRLPELNVYGHDY 230

Query: 59  KTHDGTCIRDYIDVTDLVDAHVKALERALPRK---VGIYNVGTGKGRSVNEFVEACKKAT 115
            T DG+ IRDYI V DL D H+ AL +    +      YN+GTG+G SV E V A +KA+
Sbjct: 231 PTRDGSAIRDYIHVMDLADGHIAALRKLFTSEDIGCTAYNLGTGQGTSVLEMVAAFEKAS 290

Query: 116 GVNIKVDYLPRRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGS 174
           G  I +   PRR GD   V++   K   EL W A++  + E  +  W+W  ++  GY S
Sbjct: 291 GKKIPIKLCPRRAGDATAVYASTEKAAKELGWKAKY-GIAEMCRDQWKWASNNPWGYHS 348