Jatropha Genome Database

JcCB0375141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0375141.10 - phase: 0 /pseudo/partial
         (241 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000087001 assembled CDS                                       387   e-108
GSVIVT01026455001 assembled CDS                                       142   1e-34
GSVIVT01022113001 assembled CDS                                        52   3e-07

>GSVIVT01000087001 assembled CDS
          Length = 1732

 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/209 (88%), Positives = 197/209 (94%)

Query: 24   QVRKGVLPRLLEEILSTRIMVKQAMKKLAPTELVLHRIFNARQLALKLIANVTYGYTAAG 83
            + RKGVLPRLLEEILSTRIMVK+AMKKL P++ VL RIFNARQLALKLIANVTYGYTAAG
Sbjct: 1264 KARKGVLPRLLEEILSTRIMVKKAMKKLVPSQQVLQRIFNARQLALKLIANVTYGYTAAG 1323

Query: 84   FSGRMPCAELADSIVQCGRSTLEKAISLVNANDKWNAKVIYGDTDSMFVLLKGRTVKESF 143
            +SGRMPCAELADSIVQCGR TLE AISLVN +DKW AKVIYGDTDSMFVLLKGRTVKESF
Sbjct: 1324 YSGRMPCAELADSIVQCGRRTLENAISLVNTHDKWKAKVIYGDTDSMFVLLKGRTVKESF 1383

Query: 144  QIGNEIASAVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENADQIEPVFDAKGIETV 203
            QIG+EIASAVTAMNPNPVTLK+EKVYHPCFLLTKKRYVGYSYE+ DQIEP FDAKGIETV
Sbjct: 1384 QIGHEIASAVTAMNPNPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPTFDAKGIETV 1443

Query: 204  RRDTCGAVAKMMEQSLRLFLEHQNMSEVE 232
            RRDTCGAVAK MEQSLRLF EHQ++S+V+
Sbjct: 1444 RRDTCGAVAKTMEQSLRLFFEHQDISKVK 1472


>GSVIVT01026455001 assembled CDS
          Length = 1089

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 120/206 (58%), Gaps = 12/206 (5%)

Query: 25  VRKGVLPRLLEEILSTRIMVKQAMKKLA-PTELVLHRIFNARQLALKLIANVTYGYTAAG 83
           ++KG+LP +LEE+L+ R   K  +K+   P E     + + RQLALK+ AN  YG+T A 
Sbjct: 641 LQKGILPEILEELLAARKRAKADLKEAKDPLE---KAVLDGRQLALKISANSVYGFTGAT 697

Query: 84  FSGRMPCAELADSIVQCGRSTLEKAISLVN------ANDKWNAKVIYGDTDSMFVLLKGR 137
             G++PC E++ S+   GR  +E    LV          + NA+VIYGDTDS+ VL    
Sbjct: 698 V-GQLPCIEISSSVTSYGRQMIEHTKKLVEEKFTTLGGYEHNAEVIYGDTDSVMVLFGVS 756

Query: 138 TVKESFQIGNEIASAVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENADQIEPVFDA 197
           TV+ +  +G E A  ++     P+ L+ EKVY+P  L++KKRY G  + N D+ + + D 
Sbjct: 757 TVEAAMNLGREAAEYISGTFMKPIKLEFEKVYYPYLLISKKRYAGLLWTNPDKFDKM-DT 815

Query: 198 KGIETVRRDTCGAVAKMMEQSLRLFL 223
           KGIETVRRD C  V  ++++ L   L
Sbjct: 816 KGIETVRRDNCLLVKNLVKECLHKIL 841


>GSVIVT01022113001 assembled CDS
          Length = 1561

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 33   LLEEILSTRIMVKQAMKKLAPTELVLHRIFNARQLALKLIANVTYGYTAAGFS-GRMPCA 91
            LL++++  R  VK  +K  +  ++   +  + +Q ALKL AN  YG    GFS  R    
Sbjct: 999  LLKKLVERRKTVKSRLKTASGLKV---QQLDIQQQALKLTANSMYG--CLGFSNSRFYAK 1053

Query: 92   ELADSIVQCGRSTLEKAISLVNANDKWNAKVIYGDTDSMFVLLKGRTVKESFQIGNEIAS 151
             LA+ I   GR  L+  + LV  N   N +VIYGDTDS+ +      + ++  I  ++  
Sbjct: 1054 PLAELITLQGREILQSTVDLVQNN--LNLEVIYGDTDSIMIYTGLDDITKAKAIAGKVIQ 1111

Query: 152  AVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENADQIE-PVFDAKGIETVRRD 206
             V       + + L+ +Y    LL KK+Y     +  D     V + KG++ VRRD
Sbjct: 1112 EVNKKY-RCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRD 1166