Jatropha Genome Database

JcCB0375071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0375071.10 + phase: 2 /partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008051001 assembled CDS                                       167   1e-42

>GSVIVT01008051001 assembled CDS
          Length = 698

 Score =  167 bits (423), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/89 (83%), Positives = 81/89 (91%)

Query: 17  VLVDDRNLRVADFAQFWAIAKRSGYEVYISEATYKDPVGCAARNVHGFTLDEIKSMAEQW 76
           ++VDDRNLRVADFAQFWA AKRSGYEVY+ EA+YKDP GCAARNVHGFT D+I+ MA QW
Sbjct: 423 IIVDDRNLRVADFAQFWATAKRSGYEVYLLEASYKDPAGCAARNVHGFTQDDIQRMAGQW 482

Query: 77  EEAPVLYLQLDIKSLFHGDDLKESGIQEV 105
           EEAP +YLQLDIKSLF GDDLKESGIQEV
Sbjct: 483 EEAPSMYLQLDIKSLFQGDDLKESGIQEV 511