Jatropha Genome Database

JcCB0374621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0374621.10 - phase: 1 /pseudo/partial
         (340 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032499001 assembled CDS                                       204   6e-53

>GSVIVT01032499001 assembled CDS
          Length = 610

 Score =  204 bits (518), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 116/277 (41%), Positives = 163/277 (58%), Gaps = 23/277 (8%)

Query: 76  CTEGDWGGFLSKNCCGSAFHSYLHAVGRRANRTGLIYLNSTEQSSCLAEMEKSEADVFSC 135
           C EGDWG FL+K CCG+AF  YL+++G+ AN TG +YLNSTEQ +CL  M++ EAD  SC
Sbjct: 46  CEEGDWGSFLNKGCCGAAFGGYLYSLGKHANETGKVYLNSTEQRNCLTSMKRFEADAVSC 105

Query: 136 GIDKLTSGLGGCSDFSVANVSHRLGKELKSLSENCKFDGSDKESGELCSSCINSWQYIKE 195
           GI+KLTSG GGCSDF V +V+ +LG E +SL ENCKF   D E  + CSSC+ SW+ I+ 
Sbjct: 106 GIEKLTSGTGGCSDFFVFDVTEKLGDEFRSLEENCKFVSPDGEWDQSCSSCVTSWEDIRG 165

Query: 196 KHPS---GNDICRFAILISLTSTRIDDEIYIHRVFKCLEN---DKK--QFISNVYQIQQN 247
            H +     D+CRFA+L+SL S+R +DE +  +++ CL     DK    F SN     ++
Sbjct: 166 IHSTLKDETDVCRFAVLVSLISSRTEDESWFGKIYTCLREQDIDKGHFHFQSNTRSSGRD 225

Query: 248 QKGK*SLKLVQVSGS*LVAL*ELQ****LLPQKICLDVVKNQKIH--LKRMADS--VNSV 303
           +  +   K    +G              L+   I + ++    I   L+R   S  +   
Sbjct: 226 ETSRSHTKFKISTGLWF-----------LIGGLIAMALIITIGIWFLLRRWCKSYAIPKR 274

Query: 304 AAFRNMRLKESRCSKFPLKEICSATENLSEKNLIGEG 340
           AA + +  +   C K  +KE+ SAT NL+EKN+IGEG
Sbjct: 275 AALKAVAPEGPGCMKISIKEVYSATNNLNEKNIIGEG 311