Jatropha Genome Database

JcCB0374611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0374611.10 - phase: 1 /pseudo
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009409001 assembled CDS                                       100   2e-22
GSVIVT01000215001 assembled CDS                                        94   2e-20

>GSVIVT01009409001 assembled CDS
          Length = 306

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 59/83 (71%)

Query: 27  TDSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILIT 86
           +DS GEILKG+RCYFDKALPVMLLY++ERQQY  ++ N+ SPSTIYGAEHLLRLF  L  
Sbjct: 205 SDSAGEILKGLRCYFDKALPVMLLYERERQQYQEAIANNVSPSTIYGAEHLLRLFVKLPE 264

Query: 87  LMLCFCFFEQGRVTVQSSFLRIL 109
           L+      ++    +Q   L  L
Sbjct: 265 LLFHANIEKETSKELQMELLDFL 287


>GSVIVT01000215001 assembled CDS
          Length = 321

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 24  GWHTDSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSV-ENDTSPSTIYGAEHLLRLFG 82
           G  TD + EIL G+R YFD+ALP+MLLYKKERQQ+  ++   D SPST+YGAEHLLRLF 
Sbjct: 206 GTMTDYVAEILNGLRSYFDRALPMMLLYKKERQQFQEAIYHPDLSPSTVYGAEHLLRLFV 265

Query: 83  ILITLMLCFCFFEQGRVTVQSSFLRIL 109
            L  L+ C    E+  + +Q  F+  L
Sbjct: 266 KLPELLACVNIEEETLIGMQQKFIDFL 292