Jatropha Genome Database

JcCB0374481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0374481.10 - phase: 0 /partial
         (146 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024516001 assembled CDS                                       254   1e-68
GSVIVT01009726001 assembled CDS                                       141   1e-34
GSVIVT01008562001 assembled CDS                                        52   1e-07
GSVIVT01022373001 assembled CDS                                        50   4e-07

>GSVIVT01024516001 assembled CDS
          Length = 262

 Score =  254 bits (648), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/146 (84%), Positives = 128/146 (87%)

Query: 1   LKAKGKGADGSWLWCTTDDTVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKI 60
           LK KGK ADGSWLWCTTDD+VYDAVKSMTHHNVGALVVVKPGEQKS+AGIITERDYLRKI
Sbjct: 117 LKGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLRKI 176

Query: 61  IVQGRSSKSTKVGDIMTEENKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSI 120
           IVQGRSSKSTKVGDIMTEENKLITV+PNTKVL+AMQLMTDNRIRHIPVI+DKEMIGMVSI
Sbjct: 177 IVQGRSSKSTKVGDIMTEENKLITVSPNTKVLRAMQLMTDNRIRHIPVIDDKEMIGMVSI 236

Query: 121 GDXXXXXXXXXXXXXXXXNAYIQGGY 146
           GD                NAYIQGGY
Sbjct: 237 GDVVRAVVTEHREELDRLNAYIQGGY 262


>GSVIVT01009726001 assembled CDS
          Length = 147

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 78/93 (83%)

Query: 7   GADGSWLWCTTDDTVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRS 66
           G  GSWLWC T+DTVYDA K M  +N+G+LVV+KPGE K +AGI TERDY+RKII  GRS
Sbjct: 50  GKIGSWLWCRTNDTVYDAAKHMAENNIGSLVVLKPGEPKHIAGIFTERDYMRKIIAHGRS 109

Query: 67  SKSTKVGDIMTEENKLITVTPNTKVLQAMQLMT 99
           SK TKVG+IMT+ENKL+TV+ +T +LQAMQL+T
Sbjct: 110 SKDTKVGEIMTDENKLVTVSSDTNILQAMQLLT 142


>GSVIVT01008562001 assembled CDS
          Length = 541

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 4/102 (3%)

Query: 20  TVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 79
           ++Y+A + M    V AL++        L GI+T++D   ++I +  + + T V  +MT  
Sbjct: 68  SIYEACRRMAARRVDALLLTD--SNALLCGILTDKDIATRVIARELNLEETPVSKVMTRN 125

Query: 80  NKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSIG 121
              I V  +T  ++A+Q M   + RH+PV+ + E+I ++ I 
Sbjct: 126 P--IFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIA 165



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 19  DTVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 78
           DTV  A K M    +   VV      K   GI+T +D L ++I Q    +ST V  +MT 
Sbjct: 236 DTVLTAAKKMLELKLSCAVVAVENRPK---GILTSKDILMRVIAQNLHPESTPVEKVMTP 292

Query: 79  ENKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSIGD 122
             +  T+  +T ++ A+  M D +  H+PVI+     G+V++ D
Sbjct: 293 NPECATI--DTPIVDALHTMHDGKFLHLPVIDRDG--GVVAVAD 332


>GSVIVT01022373001 assembled CDS
          Length = 556

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 20  TVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 79
           TV DA + M    V A+++        L+GI+T++D   ++I +    + T V  IMT  
Sbjct: 86  TVSDACRRMAARRVDAVLLTD--SNALLSGIVTDKDIATRVIAEELRPEQTVVSKIMTRH 143

Query: 80  NKLITVTPNTKVLQAMQLMTDNRIRHIPVINDKEMIGMVSI 120
              I V  ++  ++A++ M   + RH+PV+ + E+I ++ I
Sbjct: 144 P--IFVNSDSLAIEALEKMVQGKFRHLPVVENGEVIAILDI 182



 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 16  TTDDTVYDAVKSMTHHNVGALVVVKPGEQKSLAGIITERDYLRKIIVQGRSSKSTKVGDI 75
           +  D +  A K M  + V +++++   +   + GI+T +D L +++ Q  S + T V  +
Sbjct: 251 SPSDPISVAAKKMREYRVNSVIIMTGSK---IQGILTSKDILMRVVAQNLSPELTLVEKV 307

Query: 76  MTEENKLITVTPNTKVLQAMQLMTDNRIRHIPVIN 110
           MT   +  T+   T +L A+ +M D +  H+PV++
Sbjct: 308 MTPNPECATL--ETTILDALHIMHDGKFLHLPVVD 340