Jatropha Genome Database

JcCB0373961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0373961.10 + phase: 1 /pseudo/partial
         (130 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027608001 assembled CDS                                       100   2e-22
GSVIVT01023109001 assembled CDS                                        95   8e-21
GSVIVT01023110001 assembled CDS                                        91   1e-19

>GSVIVT01027608001 assembled CDS
          Length = 216

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 63/94 (67%)

Query: 1   FERLNPLHYXXXXXXXXXXXXXSFAILLYLEEKYPQKALLPDDIQQRALNLQAASIITSS 60
           F++LNPL +             SFAILLYL EKYPQ ALLP D Q RALNLQA++I++SS
Sbjct: 49  FKKLNPLCFVPVLVDGDIVVSDSFAILLYLNEKYPQNALLPSDPQLRALNLQASNIVSSS 108

Query: 61  MQPLHMVSLQKYMEEKIGPGEPLLWSQSIIEKGL 94
           MQPL M S+ KY+E+K GP E  LW +   EKG 
Sbjct: 109 MQPLIMQSILKYIEDKFGPAERQLWVRHNTEKGF 142


>GSVIVT01023109001 assembled CDS
          Length = 369

 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 63/96 (65%)

Query: 1   FERLNPLHYXXXXXXXXXXXXXSFAILLYLEEKYPQKALLPDDIQQRALNLQAASIITSS 60
           F +LNPL++             SFAIL+YLEEKYPQ  LLP D+ +RA+N QAA+I++++
Sbjct: 201 FSKLNPLNFVPALVDGDIVVADSFAILMYLEEKYPQHPLLPQDLHKRAINYQAANIVSAN 260

Query: 61  MQPLHMVSLQKYMEEKIGPGEPLLWSQSIIEKGLLG 96
           +QPL  + + KY+EEK G GE L W +  IEKG   
Sbjct: 261 IQPLQNLVVLKYIEEKCGSGERLTWVKHHIEKGFAA 296


>GSVIVT01023110001 assembled CDS
          Length = 227

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 62/94 (65%)

Query: 1   FERLNPLHYXXXXXXXXXXXXXSFAILLYLEEKYPQKALLPDDIQQRALNLQAASIITSS 60
           F +L+PL+Y             SFAIL+YLE+KYPQ  LLP D+++RA+N QAAS ++SS
Sbjct: 59  FSKLSPLNYVPTLVDGDMIVVESFAILMYLEDKYPQHPLLPPDLKKRAINYQAASFVSSS 118

Query: 61  MQPLHMVSLQKYMEEKIGPGEPLLWSQSIIEKGL 94
           +QPL  +  QKY+ E++G  E L W +  +EKG 
Sbjct: 119 IQPLQNLVEQKYIAEEVGSDEKLSWVKHHMEKGF 152