Jatropha Genome Database

JcCB0372261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0372261.10 - phase: 2 /pseudo/partial
         (231 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021974001 assembled CDS                                        87   9e-18
GSVIVT01037774001 assembled CDS                                        79   2e-15
GSVIVT01000171001 assembled CDS                                        73   1e-13
GSVIVT01017978001 assembled CDS                                        65   3e-11
GSVIVT01001527001 assembled CDS                                        65   3e-11
GSVIVT01015405001 assembled CDS                                        61   4e-10
GSVIVT01021971001 assembled CDS                                        59   2e-09

>GSVIVT01021974001 assembled CDS
          Length = 437

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 4/147 (2%)

Query: 65  PLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKV---PELVQALGLAEMIPNFIKN 121
           P + + F   LA Y LAS+F               +K+   P+L  ALGLA+ IPN+I++
Sbjct: 18  PQKFLGFYLLLAIYGLASSFDPDELLGLLMNMDHSKKLRVTPDLCLALGLADKIPNYIQD 77

Query: 122 LIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNSAKELQNENRNSTKVQIRAIDRELN 181
           LI++     A++YI   ++VDKFPPVSILK +L++S   +  + +N    +   +++EL 
Sbjct: 78  LIERNLLSDAIQYIHVFELVDKFPPVSILKSYLNDSKWRVFKKEKNPHLREDDVMNKELT 137

Query: 182 ALKAVWKCIADYNIQG-LSPEVLEERI 207
           AL+ V  CI +++++    PE LE+RI
Sbjct: 138 ALRDVISCITEHHLESEYPPEDLEKRI 164


>GSVIVT01037774001 assembled CDS
          Length = 403

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 57  KTGKNGMDPLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLAEMIP 116
           K G N + P+    FLH LAAY L S +              + +V  L + L L + +P
Sbjct: 99  KVGDNTLKPM---GFLHLLAAYGLGSDYDSTELLELLIDVVRYREVFGLCRGLNLVDKVP 155

Query: 117 NFIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNS---AKELQNENRNSTKVQI 173
           + I+NLI   +  +AVK++    +  KFP ++ILKD + +S   A++++ + ++S +   
Sbjct: 156 DLIQNLIGSGKPNLAVKFVLEFKLTHKFPLIAILKDIVESSRDVARKVRKDGKHSLQSVN 215

Query: 174 RAIDRELNALKAVWKCIADYNIQGLSPEV-LEERILYWKS 212
            A  +E++ALK V K I DY++    P   LEERI   +S
Sbjct: 216 EATSKEISALKLVTKYIKDYDLNNEYPGAPLEERIQKLES 255


>GSVIVT01000171001 assembled CDS
          Length = 326

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 43  VKRRGKRICTLLGKKTGKNGMDP-----LEVICFLHFLAAYSLASTFTXXXXXXXXXXXX 97
            K++ K I      K    G+D      LE   FL  LA + +AS F             
Sbjct: 95  TKQQAKAIADEWKPKLAGAGIDAANGNSLEAEAFLKLLATFRIASEFDEEELCKLVLAVA 154

Query: 98  WHEKVPELVQALGLAEMIPNFIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNS 157
              + PEL ++LGL   +P  I+ L+   ++I AV ++ A ++ ++FPPV +LK +L + 
Sbjct: 155 RRRQAPELCRSLGLTHKMPGVIEVLVNGGRQIDAVHFVHAFELTERFPPVPLLKTYLKDL 214

Query: 158 AKELQNENRNSTKVQIRAID---RELNALKAVWKCIADYNIQG 197
            +  Q +  N         D   +EL ALKAV +C+ +Y ++ 
Sbjct: 215 RRNSQGKGGNMGGAGGGLGDANAQELAALKAVIRCVEEYKLEA 257


>GSVIVT01017978001 assembled CDS
          Length = 103

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 102 VPELVQALGLAEMIPNFIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNSAKE- 160
           +P+L  +LGL + + + I+ L+ + Q++ AV + + + +VDKFPPV +LK  L +S K  
Sbjct: 1   MPKLAVSLGLGDKMADMIEELVNRGQQVDAVHFTYEVGLVDKFPPVPLLKAFLRDSKKAA 60

Query: 161 ---LQNENRNSTKVQIRAIDRELNALKAVWKCIADYNIQG 197
              L++ N +   V + A  +E +AL+AV KCI +Y ++ 
Sbjct: 61  TSILEDPNNSGRAVNL-AGRKEQSALRAVIKCIEEYKLEA 99


>GSVIVT01001527001 assembled CDS
          Length = 218

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 5/115 (4%)

Query: 104 ELVQALGLAEMIPNFIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNSAKE--- 160
           +L ++LGL+E +P  I+ LI   ++I AV   FA ++ ++F PV +LK +L  + K    
Sbjct: 10  DLCRSLGLSEKMPGVIEILINSGRQIDAVNLAFAFELTEQFSPVPLLKSYLKEARKASSP 69

Query: 161 LQNENRNSTKVQIRAIDRELNALKAVWKCIADYNIQGLSP-EVLEERILYWKSIK 214
           L+  N + T  Q    +REL ALKAV KCI D+ ++   P + L++R++  +  K
Sbjct: 70  LKPGNASPT-AQNEVNERELTALKAVIKCIEDHKLEEEYPLDPLQKRVVQLEKAK 123


>GSVIVT01015405001 assembled CDS
          Length = 297

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 71  FLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLAEMIPNFIKNLIKKKQRIV 130
           F+  +A + L   F                 +P+L  ALG  E + + I  L+K  + I 
Sbjct: 2   FMQMVAGFGLKPKFDEEFLRKQVLEFASRRDMPKLAIALGFGEKMGDIIDELVKSGKEIE 61

Query: 131 AVKYIFALDMVDKFPPVSILKDHLSNSAKE----LQNENRNSTKVQIRAIDRELNALKAV 186
           AV +     + ++F PVS+LK +L NS K     L+N N  ST     + + ELN++K +
Sbjct: 62  AVYFASESGLTERFSPVSLLKSYLHNSRKNATTILKNGNY-STAATEESGNVELNSIKTI 120

Query: 187 WKCIADYNIQ 196
            KC+ D+ ++
Sbjct: 121 IKCVEDHKLE 130


>GSVIVT01021971001 assembled CDS
          Length = 116

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query: 71  FLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLAEMIPNFIKNLIKKKQRIV 130
           FL  L  Y L   F               ++ PEL + L L E +P FI+ LI K ++I 
Sbjct: 3   FLEILGIYGLVGEFDRDDLLELFEVVAVRDRAPELCRVLELEEKMPEFIQKLITKGRQIQ 62

Query: 131 AVKYIFALDMVDKFPPVSILKDHL 154
           A+K+I+  ++V  FPPV ++K HL
Sbjct: 63  AMKFIYEFELVKLFPPVHLIKAHL 86