Jatropha Genome Database

JcCB0372241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0372241.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004010001 assembled CDS                                       237   2e-63
GSVIVT01016639001 assembled CDS                                       196   3e-51
GSVIVT01006000001 assembled CDS                                        65   1e-11

>GSVIVT01004010001 assembled CDS
          Length = 231

 Score =  237 bits (604), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/141 (81%), Positives = 121/141 (85%), Gaps = 1/141 (0%)

Query: 1   AQTVYGALHGLQTFSQLCYFNFTTSMVEVPMVPWTIIDQPRFPYRGLLIDTSRHYLPLPV 60
           AQTVYG LHGLQTFSQLC FN T   +EV  VPW IIDQPRF YRGLLIDTSRHYLPLP+
Sbjct: 92  AQTVYGVLHGLQTFSQLCRFNLTNRAIEVHQVPWYIIDQPRFFYRGLLIDTSRHYLPLPI 151

Query: 61  IEKVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSISERYTFADAAEIVRQVV 120
           I+ VIDSM YAKLNVLHWHIVDTQSFPLEIPS+PKLWNGAYSISERYT ADAAEIV    
Sbjct: 152 IKNVIDSMTYAKLNVLHWHIVDTQSFPLEIPSFPKLWNGAYSISERYTMADAAEIV-SYA 210

Query: 121 SAQGIHVLAEIDVPGHALSWW 141
             +GI VLAEIDVPGHALSW+
Sbjct: 211 QRRGISVLAEIDVPGHALSWY 231


>GSVIVT01016639001 assembled CDS
          Length = 541

 Score =  196 bits (498), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 112/140 (80%), Gaps = 1/140 (0%)

Query: 1   AQTVYGALHGLQTFSQLCYFNFTTSMVEVPMVPWTIIDQPRFPYRGLLIDTSRHYLPLPV 60
           A TVYGAL GL+TFSQLC F++ T  V+V   PW I D+PRF YRGL++DTSRHYLP+ V
Sbjct: 144 ANTVYGALRGLETFSQLCAFDYGTKTVQVYNAPWYIQDKPRFVYRGLMLDTSRHYLPIDV 203

Query: 61  IEKVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSISERYTFADAAEIVRQVV 120
           I+ VI+SM+YAKLNVLHWHI+D QSFPLE+P+YPKLW GAY+  ERYT  DA +IV    
Sbjct: 204 IKHVIESMSYAKLNVLHWHIIDEQSFPLEVPTYPKLWKGAYTKWERYTVEDAYDIV-NFA 262

Query: 121 SAQGIHVLAEIDVPGHALSW 140
             +GI+V+AEID+PGHA SW
Sbjct: 263 KMRGINVMAEIDIPGHAESW 282


>GSVIVT01006000001 assembled CDS
          Length = 272

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 68  MAYAKLNVLHWHIVDTQSFPLEIPSYPKL-WNGAYSISERYTFADAAEIVRQVVSAQGIH 126
           M+  KLNV HWHI D+ SFPL +PS P L   G+Y    +Y+  D  +IV   +   G+ 
Sbjct: 1   MSANKLNVFHWHITDSHSFPLLLPSEPDLAGKGSYGPQMQYSPEDVKKIVEFGLE-HGVR 59

Query: 127 VLAEIDVPGHALSW 140
           VL EID PGH  SW
Sbjct: 60  VLPEIDSPGHTGSW 73