Jatropha Genome Database

JcCB0371021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0371021.10 + phase: 0 
         (317 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031240001 assembled CDS                                       300   7e-82
GSVIVT01029178001 assembled CDS                                        91   6e-19

>GSVIVT01031240001 assembled CDS
          Length = 471

 Score =  300 bits (767), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 136/190 (71%), Positives = 167/190 (87%)

Query: 110 FSMLSKNCTQIPNHVAFVGSGPLPLTSIILATDHLRTTYFHNYDIDPSANSKALQLVSSD 169
           F++LS+NCT +P+ +AFVGSGPLPLTSI+LA+ HL TT FHNYDIDP+ANS A  LVSSD
Sbjct: 258 FTLLSQNCTHVPSKIAFVGSGPLPLTSIVLASYHLTTTSFHNYDIDPAANSMAAHLVSSD 317

Query: 170 PNLSKRMFSHNADIMNVSSSLKEYEVIFLAALVGMDKEEKVQVINHLAEHMAPGAILLLR 229
           P+ SKRM  H  DIMNV++ LKEY+V++LAALVGMDKEEK+QV++HLA+HMAPGA+L+LR
Sbjct: 318 PDFSKRMLFHTTDIMNVTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKHMAPGALLMLR 377

Query: 230 SAHGARAFMYPVVDPQDLQGFEVLSVFHPTDEVINSVIIARKFSRPIHSLNQGLSSALLS 289
           SAHGARAF+YPV+DP DL+GFEVLS+FHPTDEVINSV++ARKF   +HSL+QGL   +L 
Sbjct: 378 SAHGARAFLYPVIDPCDLRGFEVLSIFHPTDEVINSVVVARKFPMHVHSLDQGLGPMILP 437

Query: 290 SKCSDIQGFN 299
           SKCS+IQ FN
Sbjct: 438 SKCSEIQVFN 447


>GSVIVT01029178001 assembled CDS
          Length = 160

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 53/62 (85%)

Query: 210 VQVINHLAEHMAPGAILLLRSAHGARAFMYPVVDPQDLQGFEVLSVFHPTDEVINSVIIA 269
           V+++ H+ ++M  G  LL+RSA GARAF+YPVV+ +DL GFEVL++FHPT+EVINSV++A
Sbjct: 96  VKILGHVRKYMKEGGTLLVRSAKGARAFLYPVVEEEDLLGFEVLTIFHPTNEVINSVVLA 155

Query: 270 RK 271
           RK
Sbjct: 156 RK 157



 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 7/99 (7%)

Query: 6   QLVIEKVCEIYEKISGLESLTPSKNVNYLFTQLVHICIPQCQIDVTKLSEKVQEIRSELI 65
           +L+I ++ +I+  I  LESL PSK VN LFT LV +C P   ID+T L E++Q IR  LI
Sbjct: 16  ELLIARIVQIHANICKLESLRPSKQVNSLFTHLVKLCTPPSSIDITALPEEIQLIRQSLI 75

Query: 66  KLCGQAEGLLESHFSTIIGSHENPLHHVRLFPYYSNYLK 104
            LCG+AEGLLE  FST        L +V++  +   Y+K
Sbjct: 76  TLCGRAEGLLELEFSTF-------LTNVKILGHVRKYMK 107