Jatropha Genome Database

JcCB0370211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0370211.10 + phase: 0 /partial
         (162 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026824001 assembled CDS                                       259   3e-70
GSVIVT01018377001 assembled CDS                                       185   9e-48
GSVIVT01035291001 assembled CDS                                        87   5e-18
GSVIVT01015311001 assembled CDS                                        86   5e-18
GSVIVT01016997001 assembled CDS                                        83   7e-17
GSVIVT01013039001 assembled CDS                                        74   3e-14

>GSVIVT01026824001 assembled CDS
          Length = 605

 Score =  259 bits (663), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 124/143 (86%), Positives = 125/143 (87%)

Query: 20  TAIPGPCIVHKRGADILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFRESY 79
           TAIPGPCIVHKRGADILHDPWFNKDTGFPLTE             VISFE QYARF ESY
Sbjct: 22  TAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYARFMESY 81

Query: 80  RSLEKNTQGQPDSVVSLAKWRILNRLPDRNETLYYRVLIDNIKNFAPIIYTPTVGLVCQN 139
           RSLEKNT GQPDSVVSLAKWRILNRL DRNETLYYRVLIDNIK+FAPIIYTPTVGLVCQN
Sbjct: 82  RSLEKNTLGQPDSVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQN 141

Query: 140 YSGLFRRPRGMYFSAKDKGEMMS 162
           YSGLFRRPRGMYFS KDKGEMMS
Sbjct: 142 YSGLFRRPRGMYFSGKDKGEMMS 164


>GSVIVT01018377001 assembled CDS
          Length = 625

 Score =  185 bits (469), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 110/162 (67%), Gaps = 2/162 (1%)

Query: 3   RLARFTASSLGLSRRFSTAIPG--PCIVHKRGADILHDPWFNKDTGFPLTEXXXXXXXXX 60
           RL   +++S+   RR  T   G  P +VHKR  DILHDPWFNK T F +TE         
Sbjct: 17  RLKHRSSNSMLSGRRSFTTTEGHRPSLVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGL 76

Query: 61  XXXXVISFEQQYARFRESYRSLEKNTQGQPDSVVSLAKWRILNRLPDRNETLYYRVLIDN 120
               V+S E Q  RF    + LE N +  P    +LAKWRILNRL DRNET+YY+VLI+N
Sbjct: 77  LPPTVMSPEMQIERFMVDLKRLEVNARDGPSDPYALAKWRILNRLHDRNETMYYKVLINN 136

Query: 121 IKNFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMS 162
           I+ +API+YTPTVGLVCQNYSGLFRRPRGMYFSA D+GEMMS
Sbjct: 137 IEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAADRGEMMS 178


>GSVIVT01035291001 assembled CDS
          Length = 575

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 10/131 (7%)

Query: 32  GADILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFRESYRSLEKNTQGQPD 91
           G  +L DP  NK   F   E             V++ + Q  R   + R  +        
Sbjct: 36  GYTLLRDPHHNKGLAFTENERDAHYLRGLLPPAVLNQDLQEKRLMHNLRQYK-------- 87

Query: 92  SVVSLAKWRILNRLPDRNETLYYRVLIDNIKNFAPIIYTPTVGLVCQNYSGLFRRPRGMY 151
             V L ++  +  L +RNE L+Y++LIDN++   P++YTPTVG  CQ Y  +FRRP+G+Y
Sbjct: 88  --VPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLY 145

Query: 152 FSAKDKGEMMS 162
            S K+KG+++ 
Sbjct: 146 ISLKEKGKILE 156


>GSVIVT01015311001 assembled CDS
          Length = 591

 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 32  GADILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFRESYRSLEKNTQGQPD 91
           G  +L DP  NK   F   E             V + E Q  +   S R  +        
Sbjct: 52  GYSLLRDPRHNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQ-------- 103

Query: 92  SVVSLAKWRILNRLPDRNETLYYRVLIDNIKNFAPIIYTPTVGLVCQNYSGLFRRPRGMY 151
             V L K+  +  L +RNE L+Y++LIDN++   P++YTPTVG  CQ Y  +FRRP+G+Y
Sbjct: 104 --VPLQKYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLY 161

Query: 152 FSAKDKGEMM 161
            S K+KG+++
Sbjct: 162 ISLKEKGKIL 171


>GSVIVT01016997001 assembled CDS
          Length = 640

 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 10/135 (7%)

Query: 27  IVHKRGADILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFRESYRSLEKNT 86
           I    G  +L +P  NK   F   E             V+S + Q  +   + R      
Sbjct: 96  ITVASGYSLLRNPHHNKGLAFTEKERDHHYLRGLLPPAVVSQDLQVKKLMANIRQY---- 151

Query: 87  QGQPDSVVSLAKWRILNRLPDRNETLYYRVLIDNIKNFAPIIYTPTVGLVCQNYSGLFRR 146
                  V L K+  +  L +RNE L+Y++L+DN++   P++YTPTVG  CQ Y G+ RR
Sbjct: 152 ------TVPLQKYMAMMDLQERNEKLFYKLLMDNVEELLPVVYTPTVGEACQKYGGILRR 205

Query: 147 PRGMYFSAKDKGEMM 161
           P+G++ S  +KG+++
Sbjct: 206 PQGLFISLNEKGKIL 220


>GSVIVT01013039001 assembled CDS
          Length = 432

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 13/131 (9%)

Query: 25  PCIVHK---RGADILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFRESYRS 81
           P I+H     G  +L DP  NK   F   E             V++ + Q  R   + R 
Sbjct: 32  PHILHHIRTSGYTLLRDPHHNKGLAFTEKERDAHYLRGLLPPAVLNQDLQEKRLMHNLRQ 91

Query: 82  LEKNTQGQPDSVVSLAKWRILNRLPDRNETLYYRVLIDNIKNFAPIIYTPTVGLVCQNYS 141
            +          V L ++  +    +RNE L+Y++LIDN++   P++YTPTVG  CQ Y 
Sbjct: 92  YK----------VPLQRYMAMMDFQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYG 141

Query: 142 GLFRRPRGMYF 152
            +FRRP+ +Y 
Sbjct: 142 SIFRRPQSLYI 152