Jatropha Genome Database

JcCB0370021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0370021.10 - phase: 0 
         (141 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026137001 assembled CDS                                       150   2e-37
GSVIVT01013850001 assembled CDS                                        97   2e-21

>GSVIVT01026137001 assembled CDS
          Length = 321

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 95/127 (74%), Gaps = 6/127 (4%)

Query: 4   CYNPFPPSCRLQVVDSSRQLKNADNXXXXXXXXXXXRPFNGFRRASPKLFAYYGLKTPPY 63
           C N FP S  + + D S++ K                 F+G ++AS K+ A+YGLK PPY
Sbjct: 62  CNNSFPASSHVLLTDLSQRWK-----CPKLQNLRHKGQFHGSQKAS-KVLAFYGLKAPPY 115

Query: 64  ELDALEPYMSKKTLEMHWGEYHRGYVEELNKELAKDDVLYGYTMEELIKVTYNNGNPLPQ 123
           +LDALEP+MS++TLEMHWG++HRGYVE LNK+L KDD+LYG+T++EL+KVTYNNGNPLP+
Sbjct: 116 KLDALEPHMSRRTLEMHWGDHHRGYVEGLNKQLEKDDILYGHTLDELVKVTYNNGNPLPE 175

Query: 124 FNNAAQV 130
           FNNAAQV
Sbjct: 176 FNNAAQV 182


>GSVIVT01013850001 assembled CDS
          Length = 306

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 49  SPKLFAYYGLKTPPYELDALEPYMSKKTLEMHWGEYHRGYVEELNKELAKDDVLYGYTME 108
           S  + A + LK PPY L ALEP+MS++TLE HWG++HRGYV+ LN+++   + L G T+E
Sbjct: 41  SSLIIAKFELKPPPYPLSALEPHMSRETLEYHWGKHHRGYVDNLNRQIVGTE-LDGMTLE 99

Query: 109 ELIKVTYNNGNPLPQFNNAAQV 130
           ++I +TYN G+ LP FNNAAQV
Sbjct: 100 DIITITYNKGDLLPAFNNAAQV 121