Jatropha Genome Database

JcCB0369881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0369881.10 + phase: 0 /pseudo/partial
         (236 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018555001 assembled CDS                                       443   e-125
GSVIVT01027667001 assembled CDS                                       432   e-122
GSVIVT01016247001 assembled CDS                                       130   4e-31

>GSVIVT01018555001 assembled CDS
          Length = 518

 Score =  443 bits (1140), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/236 (90%), Positives = 219/236 (92%), Gaps = 2/236 (0%)

Query: 1   EEDLKNFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDNE 60
           EEDLK+FRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLA  EKHLAAR+NKPDNE
Sbjct: 41  EEDLKSFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLAAVEKHLAARFNKPDNE 100

Query: 61  IVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTAIAFTESVDK 120
           IVDHYTYVILGDGCQMEGI+NE CSLAGHWGLGKLIAFYDDNHISIDGDT IAFTESVD 
Sbjct: 101 IVDHYTYVILGDGCQMEGISNEVCSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTESVDT 160

Query: 121 RFEGLGWHVIWVKNGNTGYDEIRAAIKEAKAVKDKPTLIKVTTTIGYGSPNKANSYSVHG 180
           RFEGLGWHVIWVKNGNTGYDEIRAAIKEAKAVKDKPTLIKVTTTIGYGSPNKANSYSVHG
Sbjct: 161 RFEGLGWHVIWVKNGNTGYDEIRAAIKEAKAVKDKPTLIKVTTTIGYGSPNKANSYSVHG 220

Query: 181 SALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVPRGCYRSKSRME*PKFAEYE 236
           SALGAKEVDATRKNLGWP+EPFHVPEDVKKHWSRH+P G           KFAEYE
Sbjct: 221 SALGAKEVDATRKNLGWPHEPFHVPEDVKKHWSRHIPDGAALEAEWN--AKFAEYE 274


>GSVIVT01027667001 assembled CDS
          Length = 526

 Score =  432 bits (1110), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/236 (87%), Positives = 216/236 (91%), Gaps = 2/236 (0%)

Query: 1   EEDLKNFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDNE 60
           EEDLK+FRQWGS TPGHPENFETPGVEVTTGPLGQGIANAVGLALAE+HLAAR+NKPDNE
Sbjct: 41  EEDLKSFRQWGSTTPGHPENFETPGVEVTTGPLGQGIANAVGLALAERHLAARFNKPDNE 100

Query: 61  IVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTAIAFTESVDK 120
           IVDHYTYVILGDGCQMEG+A+EACSLAGHWGLGKLIA YDDNHISIDGDT IAFTE+VD 
Sbjct: 101 IVDHYTYVILGDGCQMEGVAHEACSLAGHWGLGKLIALYDDNHISIDGDTEIAFTENVDL 160

Query: 121 RFEGLGWHVIWVKNGNTGYDEIRAAIKEAKAVKDKPTLIKVTTTIGYGSPNKANSYSVHG 180
           RFE LGWHVIWVKNGNTGYDEIRAAIKEAK VKDKPTLIKVTTTIGYGSPNK+NSYSVHG
Sbjct: 161 RFEALGWHVIWVKNGNTGYDEIRAAIKEAKTVKDKPTLIKVTTTIGYGSPNKSNSYSVHG 220

Query: 181 SALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVPRGCYRSKSRME*PKFAEYE 236
           SALG KE+DATRKNL WPYEPFHVPEDVKKHWSRHVP G           +FAEYE
Sbjct: 221 SALGPKELDATRKNLRWPYEPFHVPEDVKKHWSRHVPEGAALEAEWNA--QFAEYE 274


>GSVIVT01016247001 assembled CDS
          Length = 679

 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 110/200 (55%), Gaps = 10/200 (5%)

Query: 33  LGQGIANAVGLALAEKHLAA---RYNKPDNEIVDHYTYVILGDGCQMEGIANEACSLAGH 89
           +G  +   + L +A K L A   R+NKPD  IVDH T+ I+GDGC MEGI++EA SLA H
Sbjct: 91  VGPQVTLRMWLPMALKSLQAPWARFNKPDAVIVDHRTFCIMGDGCVMEGISHEAASLAAH 150

Query: 90  WGLGKLIAFYDDNHISIDGDTAIAFTESVDKRFEGLGWHVIWVKNGNTGYDEIRAAIKEA 149
           W L KL   YDDN  +IDG T++AF+E +  RF+ L W+ I V + +   + I+ A+  A
Sbjct: 151 WKLNKLTLIYDDNLNTIDGATSLAFSEDISARFKALRWNTITVDDTHNDMEAIKNALLSA 210

Query: 150 KAVKDKPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATRKNLGWP-YEPFHVPEDV 208
               +KPT I+V       S  K  S + HG+    K+V   R+ + W   EPFHV   +
Sbjct: 211 FRETEKPTFIRVCKL----SEKKGISKAHHGT-FDEKDVKKMRRKVSWSDREPFHVIPMI 265

Query: 209 KKHWSRHVPRGCYRSKSRME 228
            +   +     C R K  ME
Sbjct: 266 YRLVFKSAAGKC-RYKQSME 284