Jatropha Genome Database

JcCB0369541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0369541.10 + phase: 0 /pseudo/partial
         (85 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009438001 assembled CDS                                        98   8e-22
GSVIVT01020205001 assembled CDS                                        67   1e-12
GSVIVT01007796001 assembled CDS                                        65   5e-12

>GSVIVT01009438001 assembled CDS
          Length = 380

 Score = 97.8 bits (242), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 46/65 (70%)

Query: 1  MASGLPMLNCLLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSK 60
          M SG+PMLNCLLQH LR            KWVYAVFWRILPRNYPPPKWDYGG ALDR K
Sbjct: 1  MESGVPMLNCLLQHALRGLCSCSDSSNSSKWVYAVFWRILPRNYPPPKWDYGGGALDRCK 60

Query: 61 GTKET 65
          G K  
Sbjct: 61 GNKRN 65


>GSVIVT01020205001 assembled CDS
          Length = 237

 Score = 67.0 bits (162), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 11 LLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSKGTK 63
          LLQHTLR            +WVYAVFWRILPRNYPPPKWD    A DRS+G +
Sbjct: 13 LLQHTLRSLCIHENS----QWVYAVFWRILPRNYPPPKWDGQAGAYDRSRGNR 61


>GSVIVT01007796001 assembled CDS
          Length = 227

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 3  SGLPMLNCLLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSKGT 62
          + +P ++ LLQHTLR             WVYAVFWRILPRNYPPP WD+ G A DRS+G 
Sbjct: 6  NSIPAIH-LLQHTLRSLCIHEDSL----WVYAVFWRILPRNYPPPNWDFQG-AFDRSRGN 59

Query: 63 K 63
          +
Sbjct: 60 R 60