Jatropha Genome Database

JcCB0369011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0369011.10 - phase: 0 /pseudo/partial
         (159 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007787001 assembled CDS                                       157   1e-39
GSVIVT01020222001 assembled CDS                                       143   4e-35
GSVIVT01028700001 assembled CDS                                       121   1e-28
GSVIVT01035450001 assembled CDS                                        64   4e-11
GSVIVT01017948001 assembled CDS                                        63   5e-11

>GSVIVT01007787001 assembled CDS
          Length = 374

 Score =  157 bits (398), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 85/112 (75%)

Query: 48  MAFPLNTPGWYADVSCGWPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQ 107
           + F    PGWYAD    WPGEAH+YKVEKVLF GKSEYQ+LF+F+S+  GKIVIL+G LQ
Sbjct: 77  VCFSSAIPGWYADAPPLWPGEAHVYKVEKVLFRGKSEYQELFIFESATSGKIVILDGYLQ 136

Query: 108 LTEKDEFVYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
           L+EKDEFVYQEMLTHL LCSIPNPKKV           RE SRHSS+ QIDI
Sbjct: 137 LSEKDEFVYQEMLTHLALCSIPNPKKVLLVGGGDGGILREASRHSSLEQIDI 188


>GSVIVT01020222001 assembled CDS
          Length = 297

 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 82/105 (78%)

Query: 55  PGWYADVSCGWPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEF 114
           PGW++++S  WPGEAH  KVEK+LF  KS+YQ++ VFQS+ +GK+++L+G +QLTE+DE 
Sbjct: 6   PGWFSEISPMWPGEAHSLKVEKILFQEKSDYQNVMVFQSATYGKVLVLDGVIQLTERDEC 65

Query: 115 VYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
            YQEM+THLPLCSIPNPKKV           RE++RHSSV QIDI
Sbjct: 66  AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEQIDI 110


>GSVIVT01028700001 assembled CDS
          Length = 355

 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 72/95 (75%)

Query: 65  WPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLP 124
           WPGEAH  KVE +LF GKSE+Q++ VF+SSA+GK+++L+G +QL+EKDE  YQEM+ HLP
Sbjct: 63  WPGEAHSLKVENILFQGKSEFQEILVFESSAYGKVLVLDGIVQLSEKDECAYQEMIAHLP 122

Query: 125 LCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
           LCSI +PK+V           REISRHSSV  IDI
Sbjct: 123 LCSIESPKRVLVVGGGDGGVLREISRHSSVELIDI 157


>GSVIVT01035450001 assembled CDS
          Length = 336

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 57  WYADV---SCGWPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDE 113
           WY +V   +  W      + +  VL  G S+YQD+ +  +   GK ++++G +Q  E DE
Sbjct: 33  WYEEVIDDNLKWS-----FALNSVLHKGTSQYQDIVLLDTKHFGKALVIDGKMQSAEVDE 87

Query: 114 FVYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQI 157
           F+Y E L H  L   PNPK +           RE  RH+S+ ++
Sbjct: 88  FIYHECLIHPALLCHPNPKTIFIMGGGEGSAAREALRHNSIEKV 131


>GSVIVT01017948001 assembled CDS
          Length = 329

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%)

Query: 72  YKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLPLCSIPNP 131
           + +  +L  G ++YQD+ +  +   GK ++++G LQ  E DEF+Y E L H  L   PNP
Sbjct: 40  FALNSILHTGATQYQDIALLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLHHPNP 99

Query: 132 KKVXXXXXXXXXXXREISRHSSVNQI 157
           K +           REI RH +V ++
Sbjct: 100 KSIFIMGGGEGSTAREILRHKTVEKV 125