Jatropha Genome Database

JcCB0368851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368851.10 - phase: 0 /pseudo
         (66 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032993001 assembled CDS                                        46   3e-06

>GSVIVT01032993001 assembled CDS
          Length = 138

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 1  MQAALTIAPPVVPLKPSKNLSQ-VTFSPPKFGVSSIAPRSSAIKAATATVEYEPSTVDYS 59
          MQAAL  AP ++PL PS+N +   + SPPK   +S+  R   IKAA A   Y+ STVDY+
Sbjct: 1  MQAALCFAPTLLPLTPSRNFATPASSSPPKLA-TSLTSRRPPIKAAAAA--YDSSTVDYN 57

Query: 60 STLS 63
          S  S
Sbjct: 58 SMTS 61