Jatropha Genome Database

JcCB0368601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368601.10 + phase: 0 /pseudo
         (374 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020111001 assembled CDS                                       343   8e-95
GSVIVT01021556001 assembled CDS                                       279   1e-75
GSVIVT01008089001 assembled CDS                                       244   6e-65
GSVIVT01017641001 assembled CDS                                        97   1e-20
GSVIVT01019973001 assembled CDS                                        89   4e-18
GSVIVT01011424001 assembled CDS                                        83   2e-16

>GSVIVT01020111001 assembled CDS
          Length = 640

 Score =  343 bits (880), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 180/352 (51%), Positives = 225/352 (63%), Gaps = 53/352 (15%)

Query: 3   LLLVYLLFMSLQIPLIFKTGNGFVPVD-----------QALPMPRPRPLLVKNDESEPKL 51
           LL +YL+FMS +IPL+ +TG G +P D           Q   +   + +  K+  S P  
Sbjct: 24  LLFLYLIFMSFEIPLVLRTGFGSLPGDGFNGFLGDAFSQQFMLESEQDMAEKDAPSRPSF 83

Query: 52  LDKPRVSH----RSPGRRMRETKRLSALFFNESIFDAVGSVDEFSLLHKASKEALMAGKK 107
                +S     R+P RRMRE K++S L F+  + +   S D +S LHK++K A   GK 
Sbjct: 84  RVSKGLSQSSRFRAPARRMREYKKVSGLAFHGGLLN---SKDGYSELHKSAKHAWEVGKT 140

Query: 108 LWEELESDKIQANPIIVNRNSTDNRTEHCPTSITLTGSEFSARNWMLELPCGLTLGSHIT 167
           LWE+L+S +IQ    + ++    N++E CP SI L+GSEF  RN ++ LP          
Sbjct: 141 LWEKLDSGEIQ----VESKRKAQNQSESCPHSIALSGSEFQDRNKIMVLPYE-------- 188

Query: 168 VVGSPRWAHPEKDPKIASLLEGENELMVSQFLMELQGLKTVDGEDPPRILHFNPRLKGDW 227
                                 +  +MVSQF+MELQGLKTVDGEDPPRILHFNPRLKGDW
Sbjct: 189 ----------------------DQSVMVSQFMMELQGLKTVDGEDPPRILHFNPRLKGDW 226

Query: 228 SGKPVIEINTCYRMHWGRTPLRCEGWSSDTDEETVDGQVKCERWLRDDDPYPEDSKATRW 287
           SGKPVIE NTCYRM WG + LRCEGW S  DEETVDGQVKCE+W+RDDD + E+SKAT W
Sbjct: 227 SGKPVIEQNTCYRMQWG-SALRCEGWKSRADEETVDGQVKCEKWIRDDDSHSEESKATWW 285

Query: 288 LNRLIGRKKEIDYQWPFPFVEGKLFVLTVSAGLEGYHISVGGRHITSFPYRT 339
           LNRLIGR K++   WP+PF E KLFVLTVSAGLEGYH++V GRH+TSFPYRT
Sbjct: 286 LNRLIGRTKKVAIDWPYPFAEEKLFVLTVSAGLEGYHVNVDGRHVTSFPYRT 337


>GSVIVT01021556001 assembled CDS
          Length = 373

 Score =  279 bits (714), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/254 (53%), Positives = 182/254 (71%), Gaps = 11/254 (4%)

Query: 90  EFSLLHKASKEALMAGKKLWEELES---DKIQANPIIVNRNSTDNRTEHCPTSITLTGSE 146
           E S+L + + EA   G + WE++E+    + + NPII      + + E CP  +++ G E
Sbjct: 103 ELSVLERMADEAWTLGLQAWEDVENFDLKESKQNPII------EGKLESCPWWLSMNGDE 156

Query: 147 FSARNWMLELPCGLTLGSHITVVGSPRWAHPEKDPKIASLLEGENELMVSQFLMELQGLK 206
           FS  + M+ LPCGL  GS ITVVG+P +AH E  P++A L  G+  +MVSQF++ELQGLK
Sbjct: 157 FSRSDRMVFLPCGLAAGSSITVVGTPHYAHREYVPQLARLRNGDAMVMVSQFMVELQGLK 216

Query: 207 TVDGEDPPRILHFNPRLKGDWSGKPVIEINTCYRMHWGRTPLRCEGWSSDTDEET-VDGQ 265
           +VDGEDPP+ILH NPRLKGDWS +PVIE NTCYRM WG T  RC+G  S  D++  VDG 
Sbjct: 217 SVDGEDPPKILHLNPRLKGDWSRRPVIEHNTCYRMQWG-TAQRCDGLPSRKDDDMLVDGY 275

Query: 266 VKCERWLRDDDPYPEDSKATRWLNRLIGRKKEIDYQWPFPFVEGKLFVLTVSAGLEGYHI 325
            +CE+W+R+D    ++SK T W  R IGR+++ +  WPFPFVEGKLF+LT+ AG+EGYHI
Sbjct: 276 GRCEKWIRNDIVDLKESKTTSWFKRFIGREQKPEVTWPFPFVEGKLFILTLRAGVEGYHI 335

Query: 326 SVGGRHITSFPYRT 339
           +VGGRH+TSFPYRT
Sbjct: 336 NVGGRHVTSFPYRT 349


>GSVIVT01008089001 assembled CDS
          Length = 448

 Score =  244 bits (622), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 123/146 (84%), Gaps = 1/146 (0%)

Query: 194 MVSQFLMELQGLKTVDGEDPPRILHFNPRLKGDWSGKPVIEINTCYRMHWGRTPLRCEGW 253
           MVSQF++ELQGLKTVDGEDPPRILH NPR+KGDWS KPVIE NTCYRM WG T LRCEGW
Sbjct: 1   MVSQFILELQGLKTVDGEDPPRILHLNPRIKGDWSRKPVIEQNTCYRMQWG-TALRCEGW 59

Query: 254 SSDTDEETVDGQVKCERWLRDDDPYPEDSKATRWLNRLIGRKKEIDYQWPFPFVEGKLFV 313
            S  DEETVDG  KCE+W+RDDD + E SK+T WLNRLIGR K++   W FPF E KLFV
Sbjct: 60  KSKADEETVDGLAKCEKWIRDDDDHSESSKSTWWLNRLIGRTKKVTVDWSFPFEEEKLFV 119

Query: 314 LTVSAGLEGYHISVGGRHITSFPYRT 339
           LT+SAGLEGYHISV GRHITSFPYRT
Sbjct: 120 LTISAGLEGYHISVDGRHITSFPYRT 145


>GSVIVT01017641001 assembled CDS
          Length = 637

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 112/249 (44%), Gaps = 37/249 (14%)

Query: 99  KEALMAGKKLWEELESDKIQANPIIVNRNSTDN---RTEHCPTSITLTGSEFSARNWMLE 155
           KEA  A K LW  +E DK        N   ++N     + CP S++       +   +LE
Sbjct: 117 KEASSAWKDLWSAIEEDKASK----FNNTQSENGNPEAKDCPFSVSTFDKTVYSSGCILE 172

Query: 156 LPCGLTLGSHITVVGSPRWAHPEKDPKIASLLEGENELMVSQFLMELQGLKTVDGEDPPR 215
            PCGL   S ITV+G P               +G N      F +EL GL+     +PP 
Sbjct: 173 FPCGLVEDSSITVIGIP---------------DGRN----GSFQVELVGLQLPGEREPPI 213

Query: 216 ILHFNPRLKGD-WSGKPVIEINT-CYRMHWGRTPLRCEGWSSDTDEETVDGQVKCERWLR 273
           +LH+N  L GD  + +PVI  NT      WG+   RC   +S T+ + VDG V C + L 
Sbjct: 214 LLHYNVSLPGDKLTEEPVIVQNTWTNETGWGKEE-RCHAHAS-TNIQKVDGLVLCNQ-LV 270

Query: 274 DDDPYPEDSKATR----WLNRLIGRKKEIDYQWPFPFVEGKLFVLTVSAGLEGYHISVGG 329
                 E+   T      L  +   +  +     FPF EG  F  T+  G EG+H++V G
Sbjct: 271 VRSTVEENLNMTHPNSDMLTNVSSGRAHVSAN--FPFAEGNPFTATLWVGSEGFHMTVNG 328

Query: 330 RHITSFPYR 338
           RH TSF YR
Sbjct: 329 RHETSFTYR 337


>GSVIVT01019973001 assembled CDS
          Length = 636

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 113/251 (45%), Gaps = 36/251 (14%)

Query: 96  KASKEALMAGKKLWEELESDKIQANPIIVNRNSTDNRTE-HCPTSIT-LTGSEFSARNWM 153
           +A KEA +A   L   +E +K+       N +S     E  CP  +  +  +E  +  + 
Sbjct: 110 EAIKEAGIAWTSLLASVEEEKLG----YTNESSVKRAKEKQCPYFLNKMNATELGSNGYK 165

Query: 154 LELPCGLTLGSHITVVGSPRWAHPEKDPKIASLLEGENELMVSQFLMELQGLKTVDGEDP 213
           L +PCGLT GS IT++G P                   + ++  F ++L G       DP
Sbjct: 166 LGVPCGLTQGSSITIIGIP-------------------DGLLGNFRIDLTGEPLPGEPDP 206

Query: 214 PRILHFNPRLKGD-WSGKPVIEINTCYRMH-WGRTPLRCEGWSSDTDEETVDGQVKCERW 271
           P ILH+N RL GD  +  PVI  NT    H WG    RC   + D +++ VD   +C   
Sbjct: 207 PIILHYNVRLHGDKITEDPVIVQNTWTIAHDWGEEE-RCPSPAPDKNKK-VDELDQCNEI 264

Query: 272 LRDDDP----YPEDSKATRWLNRLIGRKKEIDYQWPFPFVEGKLFVLTVSAGLEGYHISV 327
           +  DD         S  +R L  +    K   Y   FPF +G  FV T   G EG  ++V
Sbjct: 265 VGKDDKRVLMANYYSNGSRRLPMVQEASKTRKY---FPFKQGYHFVSTFRVGSEGIQMTV 321

Query: 328 GGRHITSFPYR 338
            G+HITSF YR
Sbjct: 322 DGKHITSFAYR 332


>GSVIVT01011424001 assembled CDS
          Length = 635

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 142/359 (39%), Gaps = 59/359 (16%)

Query: 4   LLVYLLFMSLQIPL-IFKTGNGFVPVDQALPMPRPRPLLVKNDESEPKLLDKPRVSHRSP 62
           LLV  LFM L +   + K+  GF P+  +       PL      + P +   P  S++S 
Sbjct: 8   LLVGSLFMLLVLRYGVMKSPIGFEPIQSSFIFNVSNPLEWVQPRAPPAV-QNPENSNKSV 66

Query: 63  GRRMRETKRLSALF----FNESIFDAVGSVDEFSLLHKASK------EALMAGKKLWEEL 112
                     S LF    F+  +  ++ + +    L   S+      EA+      W  L
Sbjct: 67  -----SPDTFSGLFSRRNFSSEVLSSLQTWNCMKHLTNHSRGLPNALEAIREAGAAWVNL 121

Query: 113 ESDKIQANPIIVNRNSTDNRTE-HCPTSIT-LTGSEFSARNWMLELPCGLTLGSHITVVG 170
                +      N +S     E  CP  +  +  +E    ++ L +PCGL  GS +T++G
Sbjct: 122 MVSVEKEQQGDTNESSLGQSKEKQCPHFLNKMNATELGDNSYKLRIPCGLVQGSSVTIIG 181

Query: 171 SPRWAHPEKDPKIASLLEGENELMVSQFLMELQGLKTVDGEDPPRILHFNPRLKGD-WSG 229
            P                     ++  F ++L G       DP  ILH+N RL GD  + 
Sbjct: 182 IPNG-------------------LLGNFRIDLTGEPHPGEPDPSIILHYNVRLHGDKITE 222

Query: 230 KPVIEINTCYRMH-WGRTPLRCEGWSSDTDEETVDGQVKCERWLRDDD---------PYP 279
            PVI  NT    H WG    RC   +  +  +TVD  ++C   +  +D         P  
Sbjct: 223 DPVIVQNTWTAAHDWGEEE-RCPS-TVPSSNKTVDDLIQCNEMVGKNDSNKLTASESPKI 280

Query: 280 EDSKATRWLNRLIGRKKEIDYQWPFPFVEGKLFVLTVSAGLEGYHISVGGRHITSFPYR 338
                  W NR   R+        FPF +G L V+T+  G EG  ++V G+H TSF YR
Sbjct: 281 STHSTLSW-NRARARRY-------FPFKQGYLSVMTLRVGEEGIQMTVDGKHTTSFAYR 331