Jatropha Genome Database

JcCB0368291.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.20 - phase: 0 
         (84 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008736001 assembled CDS                                       102   4e-23
GSVIVT01023968001 assembled CDS                                        98   9e-22

>GSVIVT01008736001 assembled CDS
          Length = 442

 Score =  102 bits (253), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 52/56 (92%)

Query: 1  MEKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
          MEKLSGL HLFMT FL NF+T+MV+PAITDVTM+A+CPGRDECS+AIYL+GFQQ +
Sbjct: 1  MEKLSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGRDECSIAIYLTGFQQVI 56


>GSVIVT01023968001 assembled CDS
          Length = 439

 Score = 97.8 bits (242), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 42/56 (75%), Positives = 52/56 (92%)

Query: 1  MEKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
          MEKL+GL+HLF+T  L +FS ++V+PAITDVTMSA+CPG+DECSLAIYLSGFQQA+
Sbjct: 1  MEKLAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAI 56