Jatropha Genome Database

JcCB0368291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.10 - phase: 0 /pseudo/partial/short
         (47 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008736001 assembled CDS                                        58   7e-10
GSVIVT01023968001 assembled CDS                                        51   1e-07

>GSVIVT01008736001 assembled CDS
          Length = 442

 Score = 58.2 bits (139), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 34/40 (85%), Gaps = 3/40 (7%)

Query: 4  MERLS---HLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          ME+LS   HL +T FL+NF+TFMV PA+TDVTM+ALCPG+
Sbjct: 1  MEKLSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGR 40


>GSVIVT01023968001 assembled CDS
          Length = 439

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%), Gaps = 3/40 (7%)

Query: 4  MERLS---HLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          ME+L+   HL +T  L +FS F+V PA+TDVTMSALCPG+
Sbjct: 1  MEKLAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGK 40