Jatropha Genome Database

JcCB0367641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367641.10 - phase: 0 /pseudo/partial
         (271 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035337001 assembled CDS                                       114   7e-26
GSVIVT01016905001 assembled CDS                                        70   2e-12

>GSVIVT01035337001 assembled CDS
          Length = 671

 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 32/179 (17%)

Query: 54  LDTRNQSEEKLEVCVSSRDHSVRSSTKFATRKKIASLGDAYQNQQNPDLPGANFSRFCEN 113
           LD R+Q +   +  VSSR++S +S++  +T++KI    D    Q N             +
Sbjct: 160 LDKRSQGDVNRKDYVSSREYSEKSASNLSTKEKI----DESMKQVN----------KPSS 205

Query: 114 DDFLQQESTAFLQ---QDNSGNGEGVPELTREIEKGNIFCPRSDSLSREDCSSPNKPEID 170
           +DF  Q S  F      D++ N   V               RS S S +   SP++P+ D
Sbjct: 206 EDFRDQSSANFSSLHDTDDAWNASRV---------------RSSSYSGDGLGSPSEPDND 250

Query: 171 CELSGEKTCRSLQFGNGDKSDDVSETSMVDSISALDISPDEVVGIIGQKHFWKARRAIV 229
               G+KTC +LQ GN D +DD+SETSMVDS+S LDI+PD+VVGIIGQKHFWKARRAIV
Sbjct: 251 GACRGDKTCGTLQKGNVDTNDDLSETSMVDSMSGLDITPDDVVGIIGQKHFWKARRAIV 309


>GSVIVT01016905001 assembled CDS
          Length = 730

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 169 IDCELSGEKTCRSLQFGNGDKSDDVSETSMVDSISALDISPDEVVGIIGQKHFWKARRAI 228
           ++ EL  +K   SLQ G+ D++  VS  +MV S+   DISPD+VVGIIG KHFWK R AI
Sbjct: 295 LEHELEEQKESESLQMGSIDRNCHVSNANMVGSMLGFDISPDDVVGIIGHKHFWKTRNAI 354

Query: 229 V 229
           V
Sbjct: 355 V 355