Jatropha Genome Database

JcCB0367281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367281.10 - phase: 0 /pseudo/partial
         (120 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001274001 assembled CDS                                       105   4e-24
GSVIVT01004774001 assembled CDS                                       105   5e-24

>GSVIVT01001274001 assembled CDS
          Length = 396

 Score =  105 bits (262), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 55/62 (88%)

Query: 42  QRSFPQIRASSGFSSSLDTGASTELDAVSSFSEIVPDTVIFDDFEKFPPTAATVSSSLLF 101
           QRSFPQIRAS+ FSSSLD G STE DAVS  SEIVPDTVIFDDFE+FPPTAATVSSSLL 
Sbjct: 39  QRSFPQIRASANFSSSLDKGLSTEFDAVSDLSEIVPDTVIFDDFERFPPTAATVSSSLLL 98

Query: 102 GM 103
           G+
Sbjct: 99  GI 100


>GSVIVT01004774001 assembled CDS
          Length = 396

 Score =  105 bits (262), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 55/62 (88%)

Query: 42  QRSFPQIRASSGFSSSLDTGASTELDAVSSFSEIVPDTVIFDDFEKFPPTAATVSSSLLF 101
           QRSFPQIRAS+ FSSSLD G STE DAVS  SEIVPDTVIFDDFE+FPPTAATVSSSLL 
Sbjct: 39  QRSFPQIRASANFSSSLDKGLSTEFDAVSDLSEIVPDTVIFDDFERFPPTAATVSSSLLL 98

Query: 102 GM 103
           G+
Sbjct: 99  GI 100