Jatropha Genome Database

JcCB0367131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367131.10 - phase: 0 /pseudo/partial
         (374 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031809001 assembled CDS                                       517   e-147
GSVIVT01017669001 assembled CDS                                       289   2e-78

>GSVIVT01031809001 assembled CDS
          Length = 2686

 Score =  517 bits (1331), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/366 (72%), Positives = 301/366 (82%), Gaps = 24/366 (6%)

Query: 17   IAESRQTYSEEKEAEVKLLERSVEELECTINVLENKVDILKGXXXXXXXXXXXXXXXXHA 76
            IAESR+TY+E+KE EV+LLERSVEELE T+NVLENKVDI+KG                HA
Sbjct: 2129 IAESRKTYAEDKEEEVRLLERSVEELERTVNVLENKVDIVKGEAERQRLQREELELELHA 2188

Query: 77   INHQMQNVKSADSDMKRHLDEKEKGLEEALKHIQILERDIAEKDAEITKCKAHISELNLH 136
            + HQMQNV+S+D+DMKRHLDEKEK L+EA +HI++LERDIA + AEI + KAHISELNLH
Sbjct: 2189 LKHQMQNVESSDADMKRHLDEKEKALQEASEHIKVLERDIANRVAEIAQLKAHISELNLH 2248

Query: 137  AEAQASEYKQKFKALEAMAEQVKPEGHFSHIANSSSNKLEKNASKSRGSGSPFKCIGLGL 196
            AEAQASEYKQKFKALEAM EQVKPEG  +H+ NSSSNK EKNASKSRGSGSPFKCIGLGL
Sbjct: 2249 AEAQASEYKQKFKALEAMVEQVKPEGFSTHVQNSSSNKSEKNASKSRGSGSPFKCIGLGL 2308

Query: 197  AQQMKSEKDEELTAARLRIEELESLAAGRQKEVFALNARLAAAESMTHDVIRDLLGVKLD 256
             QQ+K EKDEEL A RLRIEELE+LAA RQKE+FALNARLAA ESMTHDVIRDLLG+KLD
Sbjct: 2309 VQQIKLEKDEELFAGRLRIEELEALAASRQKEIFALNARLAATESMTHDVIRDLLGLKLD 2368

Query: 257  MTNYV------------------------EKEELIKLKQQLNEFIEERRGWLEEIDRKQA 292
            MT Y                         +++E+IKLKQQLNEF+EER+GWLEEIDRKQA
Sbjct: 2369 MTKYTSVLDNQQVQKITEKAQLHSIESQAKEQEVIKLKQQLNEFVEERQGWLEEIDRKQA 2428

Query: 293  EMVAAQIALEKLHQRDQLLKAENDMLKMENVNNKKRLMELEGEVKKLSGQQNLQQRIHHH 352
            EMVAAQIALEKL QRDQLLK EN+MLK+ENV +KK++MELEGEVKKLSGQQNLQQRIHHH
Sbjct: 2429 EMVAAQIALEKLRQRDQLLKTENEMLKLENVKHKKKVMELEGEVKKLSGQQNLQQRIHHH 2488

Query: 353  AKVKAR 358
            AK+KA+
Sbjct: 2489 AKIKAK 2494


>GSVIVT01017669001 assembled CDS
          Length = 1997

 Score =  289 bits (739), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 175/372 (47%), Positives = 231/372 (62%), Gaps = 34/372 (9%)

Query: 18   AESRQTYSEEKEAEVKLLERSVEELECTINVLENKVDILKGXXXXXXXXXXXXXXXXHAI 77
            +E+ + Y+E+KE EVK+LE SVEELECTINVLE KV  +                   A+
Sbjct: 1574 SEASKIYAEQKEEEVKILEHSVEELECTINVLEKKVCEMDEEVERHRLIRNSLELELQAL 1633

Query: 78   NHQM---------QNVKSADSDMKRHLDEKEKGLEEALKHIQILERDIAEKDAEITKCKA 128
              +M          NV+  +  + R L    + L EA   I+ILE + AE+D EI + K 
Sbjct: 1634 RQRMLTVESFTENTNVEQTEDQLSRQLYNISRELNEAHTRIRILEEERAERDKEIKQYKD 1693

Query: 129  HISELNLHAEAQASEYKQKFKALEAMAEQVKPEGHFSHIANSSSNKLEKNASKSRGSGSP 188
            +ISEL LHAEAQAS+Y+QK+K LEAM  +VK +   S  A     K EK+  ++RGS SP
Sbjct: 1694 YISELVLHAEAQASQYQQKYKTLEAMVREVKTDSSNSVSAALVQEKTEKSTMRTRGSSSP 1753

Query: 189  FKCIGLGLAQQMKSEKDEELTAARLRIEELESLAAGRQKEVFALNARLAAAESMTHDVIR 248
            F+CI  GL QQM  EKD+EL+ ARL IEELE LAA RQKEV  LN RLAAA+SMTHDVIR
Sbjct: 1754 FRCIA-GLVQQMNMEKDQELSMARLHIEELEELAANRQKEVCMLNTRLAAADSMTHDVIR 1812

Query: 249  DLLGVKLDMTNYVE------------------------KEELIKLKQQLNEFIEERRGWL 284
            DLLGVKLDMTNY +                        ++E+  LK+Q+++ IEER   +
Sbjct: 1813 DLLGVKLDMTNYADLIDQHQVLKLLEEAQQQTEESFAKEQEIRNLKKQIDDLIEERESCI 1872

Query: 285  EEIDRKQAEMVAAQIALEKLHQRDQLLKAENDMLKMENVNNKKRLMELEGEVKKLSGQQN 344
             EI+ K+A++ AAQ+  E+L +RD LL A+N+MLKM+  N K++++EL+  VKKL G QN
Sbjct: 1873 LEINSKKADIFAAQMTAEQLQERDHLLTAQNEMLKMDKTNLKRKIIELDEMVKKLFGTQN 1932

Query: 345  LQQRIHHHAKVK 356
             QQ+I    K+K
Sbjct: 1933 SQQQIPQSMKIK 1944