Jatropha Genome Database

JcCB0366431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0366431.10 - phase: 0 
         (227 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009657001 assembled CDS                                       300   4e-82
GSVIVT01023602001 assembled CDS                                       243   5e-65
GSVIVT01015953001 assembled CDS                                       232   1e-61
GSVIVT01010060001 assembled CDS                                       186   7e-48
GSVIVT01010109001 assembled CDS                                        85   2e-17

>GSVIVT01009657001 assembled CDS
          Length = 313

 Score =  300 bits (768), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 162/206 (78%), Gaps = 12/206 (5%)

Query: 21  TDPLYMSFHDEEWGVPVHDDRKLFELLVFSQALAEMSWPAILHMRDIFRKLFDNFDPSSV 80
           +DPLY SFHDEEWGVPVHDD+KLFELLV SQALAE+SWP IL+ RDIFRKLFDNFDPSS+
Sbjct: 118 SDPLYTSFHDEEWGVPVHDDKKLFELLVLSQALAELSWPTILNKRDIFRKLFDNFDPSSI 177

Query: 81  AQFTEXXXXXXXXXXXXXXXEPKLRAIVENAKLLIKVQHEFGSFNNYCWRFVNHTPLRNG 140
           A+FT+               EPKLRA++ENA  ++KVQ EFGSF+NYCW F+NH P++NG
Sbjct: 178 AKFTDKKLLSLKASGGTLLSEPKLRAVIENANQMLKVQQEFGSFSNYCWSFINHKPMKNG 237

Query: 141 FRYARQVPVKTPKAELISKDLMQRGFRCVGPTVVYSFMQVAGIVNDHLVTCFRYQECNAN 200
           FRYARQVPVKT           QRGFRCVGPTV+YSFMQVAG+VNDHL+TCFR+QECN+N
Sbjct: 238 FRYARQVPVKT-----------QRGFRCVGPTVIYSFMQVAGLVNDHLLTCFRFQECNSN 286

Query: 201 VKKNCSPKIEETEVVVTKALETTHLS 226
           +KK+   K EETE V+T ALE   LS
Sbjct: 287 IKKDLQAKTEETE-VLTNALENNCLS 311


>GSVIVT01023602001 assembled CDS
          Length = 375

 Score =  243 bits (620), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 109/177 (61%), Positives = 134/177 (75%)

Query: 21  TDPLYMSFHDEEWGVPVHDDRKLFELLVFSQALAEMSWPAILHMRDIFRKLFDNFDPSSV 80
           TD  Y++FHDEEWGVPVHDD+KLFELLV S ALAE++WP IL  R IFR++F +FDP +V
Sbjct: 159 TDLSYIAFHDEEWGVPVHDDKKLFELLVLSGALAELTWPTILSKRHIFREVFADFDPIAV 218

Query: 81  AQFTEXXXXXXXXXXXXXXXEPKLRAIVENAKLLIKVQHEFGSFNNYCWRFVNHTPLRNG 140
           A+  E               E KLR I+ENA+ + KV  EFGSF+ Y W FVNH P+ + 
Sbjct: 219 AKLNEKKLMAPGSIASSLISELKLRGIIENARQMSKVIDEFGSFDEYIWSFVNHKPIVSR 278

Query: 141 FRYARQVPVKTPKAELISKDLMQRGFRCVGPTVVYSFMQVAGIVNDHLVTCFRYQEC 197
           FRY R VPVKTPKA++ISKDL++RGFR VGPTV+YSFMQVAGI NDHL++CFR+Q+C
Sbjct: 279 FRYPRHVPVKTPKADVISKDLVRRGFRSVGPTVIYSFMQVAGITNDHLISCFRFQDC 335


>GSVIVT01015953001 assembled CDS
          Length = 360

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 131/177 (74%)

Query: 21  TDPLYMSFHDEEWGVPVHDDRKLFELLVFSQALAEMSWPAILHMRDIFRKLFDNFDPSSV 80
           TDP Y +FHDEEWGVPVHDD++ FELLV S ALAE++WPAIL  R IFR++F  FDP +V
Sbjct: 151 TDPCYAAFHDEEWGVPVHDDKRHFELLVLSGALAELTWPAILQKRHIFREVFLEFDPIAV 210

Query: 81  AQFTEXXXXXXXXXXXXXXXEPKLRAIVENAKLLIKVQHEFGSFNNYCWRFVNHTPLRNG 140
           ++  E               + KLR+++ENA+ + K+  EFGSF+ Y W FVNH P+   
Sbjct: 211 SKLNEKKIVTPGSPATSLVSDLKLRSVIENARQICKIIGEFGSFDQYIWGFVNHKPMVGR 270

Query: 141 FRYARQVPVKTPKAELISKDLMQRGFRCVGPTVVYSFMQVAGIVNDHLVTCFRYQEC 197
           FRY RQVPVKT KA++ISKDL++RGFR VGPTV+Y FMQVAGI NDHL +CFR+QEC
Sbjct: 271 FRYPRQVPVKTAKADVISKDLVRRGFRSVGPTVIYVFMQVAGITNDHLTSCFRFQEC 327


>GSVIVT01010060001 assembled CDS
          Length = 398

 Score =  186 bits (472), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 122/196 (62%), Gaps = 5/196 (2%)

Query: 7   LVVFTVGSLICFFKT---DPLYMSFHDEEWGVPVHDDRKLFELLVFSQALAEMSWPAILH 63
           LV+ T     C F T   DP Y+ +HDEEWGVPVHDD++LFELLV + A     W  +L 
Sbjct: 193 LVITTREEKRCSFITPNSDPSYVEYHDEEWGVPVHDDKRLFELLVMTGAQVGSDWTTVLK 252

Query: 64  MRDIFRKLFDNFDPSSVAQFTEXXXXXXXXXXXXXXXEPKLRAIVENAKLLIKVQHEFGS 123
            R  +R     +D   V +F+E               +  +R +V+N+  +++++ EFGS
Sbjct: 253 KRQEYRDALSGYDAEIVGKFSEKKITSISAYYGIDLSQ--VRGVVDNSNRILEIKREFGS 310

Query: 124 FNNYCWRFVNHTPLRNGFRYARQVPVKTPKAELISKDLMQRGFRCVGPTVVYSFMQVAGI 183
           F+ Y W FVNH P+   ++   ++PVKT K+E ISKD+++RGFR VGPTV+YSFMQ AG+
Sbjct: 311 FHKYIWGFVNHKPITTQYKSCHKIPVKTSKSESISKDMVRRGFRLVGPTVIYSFMQAAGL 370

Query: 184 VNDHLVTCFRYQECNA 199
            NDHL++C R+ +C A
Sbjct: 371 TNDHLISCPRHLQCIA 386


>GSVIVT01010109001 assembled CDS
          Length = 290

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 56/97 (57%)

Query: 21  TDPLYMSFHDEEWGVPVHDDRKLFELLVFSQALAEMSWPAILHMRDIFRKLFDNFDPSSV 80
           +D +Y+ FHDE WGVPV++D +LFELL  S  L + +W  IL  +++ R  F  FDP++V
Sbjct: 121 SDKVYVQFHDECWGVPVYEDNQLFELLAMSGMLMDYNWTEILKRKELLRDAFSGFDPNTV 180

Query: 81  AQFTEXXXXXXXXXXXXXXXEPKLRAIVENAKLLIKV 117
           AQ  E               E ++R IV+NAK + K 
Sbjct: 181 AQMGEKEITETASNKALMLAESRVRCIVDNAKCIQKA 217