Jatropha Genome Database

JcCB0365891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365891.10 + phase: 2 /pseudo/partial
         (154 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026819001 assembled CDS                                        91   2e-19

>GSVIVT01026819001 assembled CDS
          Length = 277

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 73/101 (72%), Gaps = 5/101 (4%)

Query: 29  KGVVNPATLRKRL-QKISRMLEKVG---KAVAPTGEGESMSRMASLSEGPT-LFKSPSKS 83
           +GV NP  LRK +  + +++L++VG   K  A TGEGES+ RM SL+EGP  L +SPSKS
Sbjct: 167 QGVSNPGLLRKVIITEAAKVLQEVGTNWKPPALTGEGESVVRMTSLTEGPAVLLRSPSKS 226

Query: 84  WKMTGSPRYASMEPRSPIIGDVVLNKIEEVSRSVKVWNFLV 124
            K+TGSPR+   + +S I GD++LNK+EEV++SVK   FL+
Sbjct: 227 LKITGSPRHTPADRKSIIPGDLLLNKLEEVTKSVKKIEFLI 267