Jatropha Genome Database

JcCB0365841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365841.10 - phase: 0 /pseudo
         (116 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035830001 assembled CDS                                       185   3e-48
GSVIVT01013471001 assembled CDS                                       152   4e-38
GSVIVT01023837001 assembled CDS                                       146   2e-36
GSVIVT01023643001 assembled CDS                                       143   2e-35
GSVIVT01034552001 assembled CDS                                       127   1e-30
GSVIVT01022285001 assembled CDS                                       124   6e-30
GSVIVT01032096001 assembled CDS                                       124   1e-29
GSVIVT01033297001 assembled CDS                                       118   7e-28
GSVIVT01028402001 assembled CDS                                       109   2e-25
GSVIVT01021248001 assembled CDS                                        68   9e-13

>GSVIVT01035830001 assembled CDS
          Length = 921

 Score =  185 bits (470), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 82/93 (88%), Positives = 89/93 (95%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          MEA+AGMVAGS++RNELVRIRHDSDSGPKPLK+LNGQ CQICGD VG+TA+GD FVACNE
Sbjct: 1  MEANAGMVAGSHKRNELVRIRHDSDSGPKPLKHLNGQICQICGDTVGLTAAGDVFVACNE 60

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          CAFPVCRPCYEYERKDG QSCPQCKTRY+RHKG
Sbjct: 61 CAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKG 93


>GSVIVT01013471001 assembled CDS
          Length = 969

 Score =  152 bits (383), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 80/93 (86%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          MEASAG+VAGS+ RNELV IR D +SGPKPL+ L+GQ CQICGD+VG+   G+ FVACNE
Sbjct: 1  MEASAGLVAGSHNRNELVVIRRDGESGPKPLQQLSGQICQICGDDVGLNVDGELFVACNE 60

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          CAFPVCR CYEYER++G+Q CPQCKTR++R KG
Sbjct: 61 CAFPVCRTCYEYERREGSQVCPQCKTRFKRLKG 93


>GSVIVT01023837001 assembled CDS
          Length = 935

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 80/94 (85%), Gaps = 1/94 (1%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDS-GPKPLKNLNGQTCQICGDNVGVTASGDTFVACN 59
          MEASAG+VAGS+ RNELV IR + ++ G KPL NL+GQTCQICGD+VG+TA G+ FVACN
Sbjct: 1  MEASAGLVAGSHNRNELVVIRREGEAAGRKPLANLSGQTCQICGDDVGLTAEGELFVACN 60

Query: 60 ECAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          ECAFP+CR CYEYER +G Q CPQCKTR++R KG
Sbjct: 61 ECAFPICRTCYEYERSEGNQVCPQCKTRFKRLKG 94


>GSVIVT01023643001 assembled CDS
          Length = 1037

 Score =  143 bits (360), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 77/93 (82%), Gaps = 2/93 (2%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          MEASAG+VAGS+ RNELV I    +  PKPL++LNGQ C+ICGD +G+T  G+ FVACNE
Sbjct: 1  MEASAGLVAGSHNRNELVVIHGHEE--PKPLRSLNGQVCEICGDEIGLTVDGEVFVACNE 58

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          C FPVCRPCYEYER++G+Q CPQCKTR++R KG
Sbjct: 59 CGFPVCRPCYEYERREGSQLCPQCKTRFKRLKG 91


>GSVIVT01034552001 assembled CDS
          Length = 1067

 Score =  127 bits (318), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 68/93 (73%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          M+    +VAGS+ RNE V I  D       +K L+GQ CQICGD + +T  G+ FVACNE
Sbjct: 1  MDTKGRLVAGSHNRNEFVLINADEIGRVTSVKELSGQICQICGDEIEITVDGEPFVACNE 60

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          CAFPVCRPCYEYER++G Q+CPQCKTRY+R KG
Sbjct: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKG 93


>GSVIVT01022285001 assembled CDS
          Length = 1097

 Score =  124 bits (312), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 67/93 (72%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          M     +VAGS+ RNE V I  D  +  K ++ L+GQ C ICGD V +T  G+ FVACNE
Sbjct: 1  MATGGRLVAGSHHRNEFVLINADDIARIKSVRELSGQICHICGDGVEITVDGELFVACNE 60

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          CAFPVCRPCYEYER++G + CPQCKTRY+R KG
Sbjct: 61 CAFPVCRPCYEYERREGNKVCPQCKTRYKRMKG 93


>GSVIVT01032096001 assembled CDS
          Length = 929

 Score =  124 bits (310), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 59/71 (83%)

Query: 23 DSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQSCP 82
          + +SG K LK L GQ CQICGDNVG T  G+ F+AC+ CAFPVCRPCYEYERKDG QSCP
Sbjct: 4  EGESGAKSLKGLGGQVCQICGDNVGKTVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCP 63

Query: 83 QCKTRYRRHKG 93
          QCKTRY+RHKG
Sbjct: 64 QCKTRYKRHKG 74


>GSVIVT01033297001 assembled CDS
          Length = 1243

 Score =  118 bits (295), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 55/67 (82%)

Query: 27  GPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQSCPQCKT 86
           GPKP K+   Q CQIC DNVG T  G+ F+AC+ CAFPVCRPCYEYERKDG QSCPQCKT
Sbjct: 163 GPKPSKHTGDQVCQICNDNVGTTVDGEPFIACSVCAFPVCRPCYEYERKDGNQSCPQCKT 222

Query: 87  RYRRHKG 93
           +Y+RHKG
Sbjct: 223 KYKRHKG 229


>GSVIVT01028402001 assembled CDS
          Length = 1000

 Score =  109 bits (273), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 63/89 (70%), Gaps = 3/89 (3%)

Query: 5  AGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAFP 64
          AG+VAGS+ RNE+  + H       P +    + C++CGD +GV A G+ FVAC+EC FP
Sbjct: 2  AGLVAGSHTRNEM-HVLHGEQR--PPTRQSVPKLCRVCGDEIGVKADGELFVACHECGFP 58

Query: 65 VCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          VC+PCYEYER +G Q CPQC TRY+RHKG
Sbjct: 59 VCKPCYEYERSEGNQCCPQCNTRYKRHKG 87


>GSVIVT01021248001 assembled CDS
          Length = 983

 Score = 67.8 bits (164), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 39 CQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 88
          C  CG+ VG  ++G+ FVAC+EC FPVC+ C +YE K+G + C +C T Y
Sbjct: 9  CTTCGEPVGFDSNGEVFVACHECNFPVCKSCLDYEIKEGRKVCLRCSTPY 58