Jatropha Genome Database

JcCB0365731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365731.10 + phase: 0 /partial
         (53 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037666001 assembled CDS                                        93   3e-20
GSVIVT01030430001 assembled CDS                                        91   1e-19
GSVIVT01012719001 assembled CDS                                        80   2e-16
GSVIVT01001307001 assembled CDS                                        79   4e-16
GSVIVT01027638001 assembled CDS                                        76   3e-15
GSVIVT01028202001 assembled CDS                                        50   1e-07

>GSVIVT01037666001 assembled CDS
          Length = 119

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA SSFK EHPLERRQAE+ARIREKYPDRIPVIVE+AERSDIPDIDKKK
Sbjct: 1  MARSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKK 49


>GSVIVT01030430001 assembled CDS
          Length = 121

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 46/49 (93%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA  SFK EHPLERRQAE+ARIREKYPDRIPVIVERAE+SDIPDIDKKK
Sbjct: 1  MAKISFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDIPDIDKKK 49


>GSVIVT01012719001 assembled CDS
          Length = 141

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 2  QAMANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
           A ++S+FK EHPLE+RQ E+ARIR+K+PDRIPVIVE+A RSDIP IDKKK
Sbjct: 20 MAKSSSNFKLEHPLEKRQTEAARIRKKHPDRIPVIVEKANRSDIPSIDKKK 70


>GSVIVT01001307001 assembled CDS
          Length = 122

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 44/49 (89%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA S FK EH  E+R+AE+ARIREKYPDRIPVIVE+AERSDIP+IDKKK
Sbjct: 1  MAKSYFKQEHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKK 49


>GSVIVT01027638001 assembled CDS
          Length = 124

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA S FK EH  E+R+AE+ARIR+KYP+RIPVIVE+AERSDIP+IDKKK
Sbjct: 1  MAKSYFKQEHEFEKRRAEAARIRDKYPERIPVIVEKAERSDIPNIDKKK 49


>GSVIVT01028202001 assembled CDS
          Length = 124

 Score = 50.4 bits (119), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 32/47 (68%)

Query: 7  SSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKKL 53
          SSFK E   E R  ES  I  KYPDR+PVI ER  ++D+P+++KKK 
Sbjct: 2  SSFKNEFSYEERLEESRDIIAKYPDRVPVIAERYSKTDLPEMEKKKF 48