Jatropha Genome Database

JcCB0365551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365551.10 - phase: 0 
         (161 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035117001 assembled CDS                                       238   1e-63

>GSVIVT01035117001 assembled CDS
          Length = 226

 Score =  238 bits (606), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/133 (86%), Positives = 124/133 (93%)

Query: 1   MATASLGVQKLLQVGTKIIAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTIEIP 60
           MATAS    KLLQ+GTKI+AVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTI +P
Sbjct: 1   MATASSAYLKLLQMGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTILVP 60

Query: 61  HPLESLDHEVELAVVIGQKGRDVPQTIAMDYVGGYALGLDMTAREIQSSAKSAGLPWTVA 120
           HPLESL HEVELAVVIGQK RDVP++ AMDYVGGYA+ LDMTAREIQ+SAKSAGLPWTV+
Sbjct: 61  HPLESLHHEVELAVVIGQKARDVPESAAMDYVGGYAVALDMTAREIQASAKSAGLPWTVS 120

Query: 121 KGQDTFTPISSVV 133
           KGQDTFTPISSV+
Sbjct: 121 KGQDTFTPISSVL 133